Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq10555 152 6e-32 seq183 107 2e-18 seq10520 102 9e-17 seq10543 100 3e-16 seq5358 100 3e-16 seq10696 98.7 1e-15 seq10607 95.1 1e-14 seq10558 95.1 1e-14 seq516 93.3 5e-14 >seq10555 Length=3328687 Score = 152 bits (168), Expect = 6e-32 Identities = 180/244 (74%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | ||| | |||| || | ||| |||||| || || ||||| || | | Sbjct 3318417 CCTCCCCTCAGACGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3318476 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| || ||||||||||||||||| || || ||||||||||||| || Sbjct 3318477 AGGGTGCGTCCGTCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGGG 3318536 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | |||||| || ||| || ||||| || | | |||||||| | ||||| Sbjct 3318537 ATTCCCTCCTTATCTTGGATCTTGGCTTTGACGTTCTCGATGGTGTCGCTTGGCTCCACC 3318596 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACGCCGAAT 43196 || | |||||||| || || || |||||||| |||||||| ||||| ||||||| |||| Sbjct 3318597 TCCAAGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCATCTTTACGCTGAAT 3318656 Query 43197 ACAA 43200 |||| Sbjct 3318657 ACAA 3318660 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | ||| | || | ||| | ||| |||||| || || ||||| || | | Sbjct 3315667 CCTCCCCTCAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3315726 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || ||||||||||||||||| || | ||||||||||||| || Sbjct 3315727 AGGGTGCGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCGGGAGGA 3315786 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||| ||| ||| || ||||| || | | ||||| || | ||||| Sbjct 3315787 ATGCCTTCCTTATCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGCTCCACT 3315846 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| |||||||| ||||| || |||||||| || ||||| ||||| Sbjct 3315847 TCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 3315893 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 || |||||||| || || ||||| || | ||||| || | || || ||||||||||| Sbjct 3315469 GTACTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCATCTTCAAGCTGCTTACCG 3315528 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 || || || || ||||||||||| | || | | |||||| || ||| || |||| Sbjct 3315529 GCAAAGATCAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTATCTTGGATCTTGGCTTTG 3315588 Query 43107 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 43166 | || | | |||||||| | |||||| || | |||||||| || || || || ||| Sbjct 3315589 ACGTTCTCAATAGTGTCGCTGGGTTCCACCTCCAAGGTGATGGTCTTACCAGTGAGGGTC 3315648 Query 43167 TTTACAAAGATTTGCAT 43183 || |||||||| ||||| Sbjct 3315649 TTGACAAAGATCTGCAT 3315665 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| || | ||| | ||| |||||| || || ||||| || | ||| || || | Sbjct 3315222 ACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCC 3315281 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||||||||| || || || ||||||||||||| || | | |||||| Sbjct 3315282 ATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTT 3315341 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| |||||| || | | | | ||||| || | ||||| |||| ||||| Sbjct 3315342 ATCCTGGATTTTAGCCTTCACATTTTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGAT 3315401 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || || |||||||| || ||||| ||||| Sbjct 3315402 GGTCTTACCAGTCAGCGTCTTCACGAAGATCTGCAT 3315437 >seq183 Length=784777 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | ||| | || | ||| | ||| ||| || || |||||||| || | | Sbjct 332086 CCTCCCCTGAGACGAAGGACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAGTCGGAC 332145 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || || |||||||| |||||||| || | | ||||||||| | || Sbjct 332146 AAGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 332205 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || || |||||| ||| || ||||| || | | ||||| || | || || Sbjct 332206 ATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTCTCAATTGTGTCACTTGGCTCAACC 332265 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 43185 || | |||||||| ||||| || || ||||| |||||||||||||||| Sbjct 332266 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATTTGCATTT 332314 >seq10520 Length=3642855 Score = 102 bits (112), Expect = 9e-17 Identities = 75/86 (87%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 60057 AAAAATTT-TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||| ||| ||||| || | |||||| |||||| ||||||||||||||||||||| ||| Sbjct 1859927 AAAAGTTTATCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1859986 Query 60116 CTCACCACTATACTACCGAGGATTGA 60141 ||||||||||||||| |||||| ||| Sbjct 1859987 CTCACCACTATACTAACGAGGAGTGA 1860012 Score = 100 bits (110), Expect = 3e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 1864597 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 1864656 Query 60124 TATACTACCGAGGATTGA 60141 ||||||| |||||| ||| Sbjct 1864657 TATACTAACGAGGAGTGA 1864674 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| | | |||||| |||||| ||||||||||||||||| || ||||||||||| Sbjct 1858988 TTCTCCCTGTCGGGGAATTGAACCCCAGTCTCCCGCGTGACAGGTGGGGATACTCACCAC 1859047 Query 60124 TATACTACCGAGGATTGA 60141 ||||||| |||||| ||| Sbjct 1859048 TATACTAACGAGGAGTGA 1859065 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | |||||| ||| || ||||||||||||||||||||| |||||||| || Sbjct 1861948 TTCTCC-CGTCGGGGAATTGAATCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACTAC 1862006 Query 60124 TATACTACCGAGGATTGA 60141 ||||||| |||||| ||| Sbjct 1862007 TATACTAACGAGGAGTGA 1862024 >seq10543 Length=3469552 Score = 100 bits (110), Expect = 3e-16 Identities = 75/88 (85%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 || |||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| | Sbjct 1617063 ATGTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTATC 1617122 Query 60121 CACTATACTACCGAGGATTGAATATATA 60148 |||||||||| |||||| ||| | |||| Sbjct 1617123 CACTATACTAACGAGGAGTGAGTGTATA 1617150 Score = 98.7 bits (108), Expect = 1e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| ||| Sbjct 1617556 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCA 1617615 Query 60123 CTATACTACCGAGGATTGA 60141 |||||||| |||||| ||| Sbjct 1617616 CTATACTAACGAGGAGTGA 1617634 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| ||| Sbjct 1618025 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCA 1618084 Query 60123 CTATACTACCGAGGATTG 60140 |||||||| |||||| || Sbjct 1618085 CTATACTAACGAGGAGTG 1618102 >seq5358 Length=4687 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 2345 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2286 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 2285 ATACTAACGAGGA 2273 >seq10696 Length=1481488 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 |||||||| | ||||||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 848992 TCTCCTCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 848933 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 848932 ATACTAACGAGGAT 848919 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 845757 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 845816 Query 60125 ATACTACCGAGGATT 60139 |||||| |||||||| Sbjct 845817 ATACTAACGAGGATT 845831 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 815349 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 815408 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 815409 ATACTAACGAGGAT 815422 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 816133 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 816192 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 816193 ATACTAACGAGGAT 816206 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 819265 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 819206 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 819205 ATACTAACGAGGA 819193 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 849628 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 849569 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 849568 TACTAACGAGGAT 849556 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| ||| |||||||||||| ||||| |||||| Sbjct 817338 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGTGTGACAGGCGGAGATACTGTCCACTA 817279 Query 60126 TACTACCGAGGAT 60138 || || ||||||| Sbjct 817278 TATTAACGAGGAT 817266 >seq10607 Length=2140885 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1068588 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1068647 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1068648 TACTAACGAGGA 1068659 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1074584 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1074643 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1074644 TACTAACGAGGA 1074655 >seq10558 Length=2852526 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/81 (86%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| |||| || | ||||||||||||| ||||| |||||||||||||||| |||| Sbjct 2035419 AAAAATT--CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATAC 2035476 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||| |||||| Sbjct 2035477 TGTCCACTATACTAACGAGGA 2035497 >seq516 Length=255305 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 25564 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 25505 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 25504 ATACTAACGAGGAT 25491 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 29038 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 28979 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 28978 ATACTAACGAGGAT 28965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571740869225800