Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq10555 152 6e-32
seq183 107 2e-18
seq10520 102 9e-17
seq10543 100 3e-16
seq5358 100 3e-16
seq10696 98.7 1e-15
seq10607 95.1 1e-14
seq10558 95.1 1e-14
seq516 93.3 5e-14
>seq10555
Length=3328687
Score = 152 bits (168), Expect = 6e-32
Identities = 180/244 (74%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
||||| || | ||| | |||| || | ||| |||||| || || ||||| || | |
Sbjct 3318417 CCTCCCCTCAGACGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3318476
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
|| || || |||| || ||||||||||||||||| || || ||||||||||||| ||
Sbjct 3318477 AGGGTGCGTCCGTCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGGG 3318536
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| | |||||| || ||| || ||||| || | | |||||||| | |||||
Sbjct 3318537 ATTCCCTCCTTATCTTGGATCTTGGCTTTGACGTTCTCGATGGTGTCGCTTGGCTCCACC 3318596
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACGCCGAAT 43196
|| | |||||||| || || || |||||||| |||||||| ||||| ||||||| ||||
Sbjct 3318597 TCCAAGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCATCTTTACGCTGAAT 3318656
Query 43197 ACAA 43200
||||
Sbjct 3318657 ACAA 3318660
Score = 125 bits (138), Expect = 8e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
||||| || | ||| | || | ||| | ||| |||||| || || ||||| || | |
Sbjct 3315667 CCTCCCCTCAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3315726
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
|| || || | || || ||||||||||||||||| || | ||||||||||||| ||
Sbjct 3315727 AGGGTGCGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCGGGAGGA 3315786
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| || ||||| ||| ||| || ||||| || | | ||||| || | |||||
Sbjct 3315787 ATGCCTTCCTTATCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGCTCCACT 3315846
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||| |||||||| ||||| || |||||||| || ||||| |||||
Sbjct 3315847 TCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 3315893
Score = 113 bits (124), Expect = 5e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046
|| |||||||| || || ||||| || | ||||| || | || || |||||||||||
Sbjct 3315469 GTACTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCATCTTCAAGCTGCTTACCG 3315528
Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106
|| || || || ||||||||||| | || | | |||||| || ||| || ||||
Sbjct 3315529 GCAAAGATCAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTATCTTGGATCTTGGCTTTG 3315588
Query 43107 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 43166
| || | | |||||||| | |||||| || | |||||||| || || || || |||
Sbjct 3315589 ACGTTCTCAATAGTGTCGCTGGGTTCCACCTCCAAGGTGATGGTCTTACCAGTGAGGGTC 3315648
Query 43167 TTTACAAAGATTTGCAT 43183
|| |||||||| |||||
Sbjct 3315649 TTGACAAAGATCTGCAT 3315665
Score = 111 bits (122), Expect = 2e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||||| || | ||| | ||| |||||| || || ||||| || | ||| || || |
Sbjct 3315222 ACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCC 3315281
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
|| || |||||||||||||| || || || ||||||||||||| || | | ||||||
Sbjct 3315282 ATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTT 3315341
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
||| |||||| || | | | | ||||| || | ||||| |||| |||||
Sbjct 3315342 ATCCTGGATTTTAGCCTTCACATTTTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGAT 3315401
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||| || || || |||||||| || ||||| |||||
Sbjct 3315402 GGTCTTACCAGTCAGCGTCTTCACGAAGATCTGCAT 3315437
>seq183
Length=784777
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
||||| || | ||| | || | ||| | ||| ||| || || |||||||| || | |
Sbjct 332086 CCTCCCCTGAGACGAAGGACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAGTCGGAC 332145
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
| || || | || || |||||||| |||||||| || | | ||||||||| | ||
Sbjct 332146 AAGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 332205
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| || || |||||| ||| || ||||| || | | ||||| || | || ||
Sbjct 332206 ATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTCTCAATTGTGTCACTTGGCTCAACC 332265
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 43185
|| | |||||||| ||||| || || ||||| ||||||||||||||||
Sbjct 332266 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATTTGCATTT 332314
>seq10520
Length=3642855
Score = 102 bits (112), Expect = 9e-17
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand=Plus/Plus
Query 60057 AAAAATTT-TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115
|||| ||| ||||| || | |||||| |||||| ||||||||||||||||||||| |||
Sbjct 1859927 AAAAGTTTATCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1859986
Query 60116 CTCACCACTATACTACCGAGGATTGA 60141
||||||||||||||| |||||| |||
Sbjct 1859987 CTCACCACTATACTAACGAGGAGTGA 1860012
Score = 100 bits (110), Expect = 3e-16
Identities = 69/78 (88%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct 1864597 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 1864656
Query 60124 TATACTACCGAGGATTGA 60141
||||||| |||||| |||
Sbjct 1864657 TATACTAACGAGGAGTGA 1864674
Score = 87.8 bits (96), Expect = 2e-12
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| | | |||||| |||||| ||||||||||||||||| || |||||||||||
Sbjct 1858988 TTCTCCCTGTCGGGGAATTGAACCCCAGTCTCCCGCGTGACAGGTGGGGATACTCACCAC 1859047
Query 60124 TATACTACCGAGGATTGA 60141
||||||| |||||| |||
Sbjct 1859048 TATACTAACGAGGAGTGA 1859065
Score = 87.8 bits (96), Expect = 2e-12
Identities = 67/78 (86%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| || | |||||| ||| || ||||||||||||||||||||| |||||||| ||
Sbjct 1861948 TTCTCC-CGTCGGGGAATTGAATCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACTAC 1862006
Query 60124 TATACTACCGAGGATTGA 60141
||||||| |||||| |||
Sbjct 1862007 TATACTAACGAGGAGTGA 1862024
>seq10543
Length=3469552
Score = 100 bits (110), Expect = 3e-16
Identities = 75/88 (85%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120
|| |||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |
Sbjct 1617063 ATGTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTATC 1617122
Query 60121 CACTATACTACCGAGGATTGAATATATA 60148
|||||||||| |||||| ||| | ||||
Sbjct 1617123 CACTATACTAACGAGGAGTGAGTGTATA 1617150
Score = 98.7 bits (108), Expect = 1e-15
Identities = 69/79 (87%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
||||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||
Sbjct 1617556 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCA 1617615
Query 60123 CTATACTACCGAGGATTGA 60141
|||||||| |||||| |||
Sbjct 1617616 CTATACTAACGAGGAGTGA 1617634
Score = 96.9 bits (106), Expect = 4e-15
Identities = 68/78 (87%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
||||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||
Sbjct 1618025 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCA 1618084
Query 60123 CTATACTACCGAGGATTG 60140
|||||||| |||||| ||
Sbjct 1618085 CTATACTAACGAGGAGTG 1618102
>seq5358
Length=4687
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 2345 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2286
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 2285 ATACTAACGAGGA 2273
>seq10696
Length=1481488
Score = 98.7 bits (108), Expect = 1e-15
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
|||||||| | ||||||||||||| ||||| |||||||||||||||| ||||| |||||
Sbjct 848992 TCTCCTCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 848933
Query 60125 ATACTACCGAGGAT 60138
|||||| |||||||
Sbjct 848932 ATACTAACGAGGAT 848919
Score = 95.1 bits (104), Expect = 1e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||
Sbjct 845757 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 845816
Query 60125 ATACTACCGAGGATT 60139
|||||| ||||||||
Sbjct 845817 ATACTAACGAGGATT 845831
Score = 93.3 bits (102), Expect = 5e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||
Sbjct 815349 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 815408
Query 60125 ATACTACCGAGGAT 60138
|||||| |||||||
Sbjct 815409 ATACTAACGAGGAT 815422
Score = 93.3 bits (102), Expect = 5e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||
Sbjct 816133 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 816192
Query 60125 ATACTACCGAGGAT 60138
|||||| |||||||
Sbjct 816193 ATACTAACGAGGAT 816206
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||
Sbjct 819265 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 819206
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 819205 ATACTAACGAGGA 819193
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||| |||||||||||||||| ||||| ||||||
Sbjct 849628 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 849569
Query 60126 TACTACCGAGGAT 60138
||||| |||||||
Sbjct 849568 TACTAACGAGGAT 849556
Score = 82.4 bits (90), Expect = 9e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||| ||| |||||||||||| ||||| ||||||
Sbjct 817338 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGTGTGACAGGCGGAGATACTGTCCACTA 817279
Query 60126 TACTACCGAGGAT 60138
|| || |||||||
Sbjct 817278 TATTAACGAGGAT 817266
>seq10607
Length=2140885
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 1068588 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1068647
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 1068648 TACTAACGAGGA 1068659
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 1074584 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1074643
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 1074644 TACTAACGAGGA 1074655
>seq10558
Length=2852526
Score = 95.1 bits (104), Expect = 1e-14
Identities = 70/81 (86%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||||| |||| || | ||||||||||||| ||||| |||||||||||||||| ||||
Sbjct 2035419 AAAAATT--CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATAC 2035476
Query 60117 TCACCACTATACTACCGAGGA 60137
| ||||||||||| ||||||
Sbjct 2035477 TGTCCACTATACTAACGAGGA 2035497
>seq516
Length=255305
Score = 93.3 bits (102), Expect = 5e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||
Sbjct 25564 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 25505
Query 60125 ATACTACCGAGGAT 60138
|||||| |||||||
Sbjct 25504 ATACTAACGAGGAT 25491
Score = 93.3 bits (102), Expect = 5e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||
Sbjct 29038 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 28979
Query 60125 ATACTACCGAGGAT 60138
|||||| |||||||
Sbjct 28978 ATACTAACGAGGAT 28965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571740869225800
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