Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq10555 104 2e-17 seq183 95.1 8e-15 >seq10555 Length=3328687 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| ||||||||||||||||| || |||| Sbjct 3318432 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCT 3318491 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || ||||| || || |||||||||||| || | | |||||| || Sbjct 3318492 TCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCT 3318551 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||| || ||||| | | | || | ||| | | || || |||| |||||||| Sbjct 3318552 TGGATC-TTGGCTTTGACGTTCTCGATGGTGTCGCTTGGCTCCACCTCCAAGGTGATGGT 3318610 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || || |||||||||||||||||| Sbjct 3318611 CTTACCAGTCAGCGTCTTCACAAAGATCTGCATC 3318644 Score = 98.7 bits (108), Expect = 6e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||||| || ||||| |||||||||||||| || ||| | || Sbjct 3315454 AGGACAAGGTGGAGGGTACTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCATCT 3315513 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || || || || || ||||||||||| || | | |||||| || Sbjct 3315514 TCAAGCTGCTTACCGGCAAAGATCAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTATCT 3315573 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||| || ||||| | | | || | ||| | | ||| || |||| |||||||| Sbjct 3315574 TGGATC-TTGGCTTTGACGTTCTCAATAGTGTCGCTGGGTTCCACCTCCAAGGTGATGGT 3315632 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| || || |||||||||||||| Sbjct 3315633 CTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 3315665 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||||||| || | || |||| |||||| || ||||| Sbjct 3315703 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCGAAG 3315762 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || | |||||||||||| || | || ||||| || ||| || ||||| | | Sbjct 3315763 ATCAAACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATC-TTGGCTTTGACGTT 3315821 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | || || || | |||||||| ||||| || || || ||||| Sbjct 3315822 CTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTCAC 3315881 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 3315882 GAAGATCTGCAT 3315893 >seq183 Length=784777 Score = 95.1 bits (104), Expect = 8e-15 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGAC-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 |||||||| || |||||||||||| || || || | || |||| ||||||||| ||||| Sbjct 332122 TCTTTCTGGATATTGTAGTCGGACAAGGTG-CGTCCATCTTCCAGCTGCTTGCCAGCGAA 332180 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 || | || ||||||||| ||| | || || ||||| ||| || ||||| | || Sbjct 332181 GATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATC-TTGGCTTTGACAT 332239 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | || || || | |||||||| ||||| ||||| || |||| Sbjct 332240 TCTCAATTGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 332299 Query 34377 CAAAGATCTGCAT 34389 ||||||| ||||| Sbjct 332300 CAAAGATTTGCAT 332312 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 |||||| | || | |||||||||||| | ||| || ||||| ||||||||||| || Sbjct 331625 TCCGCCCCTGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 331684 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA----AATGAGCCGCTGCTGGTCGA 34277 ||| || | || |||| ||| ||||| || || || | || |||||| || Sbjct 331685 CAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCAACCTCTGCTGATCTG 331744 Query 34278 CGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGAT 34336 ||| | || ||| ||||| ||| || ||||| | || | || | ||| | | Sbjct 331745 GGGGAATGCCCTCTTTGTCTTGGATC-TTGGCTTTGACATTCTCAATGGTGTCGCTTGGC 331803 Query 34337 TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | |||||||| |||||||| || || || || ||||||||||| Sbjct 331804 TCAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTTACGAAGATCTGCAT 331856 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| ||||||||||||||||| || | || |||| ||| ||||| || || Sbjct 331893 TTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAA 331952 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || | || |||||| || ||| | || || ||||| ||||| ||| | | Sbjct 331953 GATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTT 332012 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | ||| | | || || || | |||||||| ||||| || || || ||||| Sbjct 332013 CTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 332072 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 332073 GAAGATCTGCAT 332084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323029731581600