Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq10555 104 2e-17
seq183 95.1 8e-15
>seq10555
Length=3328687
Score = 104 bits (114), Expect = 2e-17
Identities = 153/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||||||| | || || ||||| ||||||||||||||||| || ||||
Sbjct 3318432 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCT 3318491
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|||| |||||| || ||||| || || |||||||||||| || | | |||||| ||
Sbjct 3318492 TCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCT 3318551
Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356
||| || ||||| | | | || | ||| | | || || |||| ||||||||
Sbjct 3318552 TGGATC-TTGGCTTTGACGTTCTCGATGGTGTCGCTTGGCTCCACCTCCAAGGTGATGGT 3318610
Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| || || || || ||||||||||||||||||
Sbjct 3318611 CTTACCAGTCAGCGTCTTCACAAAGATCTGCATC 3318644
Score = 98.7 bits (108), Expect = 6e-16
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| || ||||| | ||||| || ||||| |||||||||||||| || ||| | ||
Sbjct 3315454 AGGACAAGGTGGAGGGTACTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCATCT 3315513
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | |||||| || || || || || ||||||||||| || | | |||||| ||
Sbjct 3315514 TCAAGCTGCTTACCGGCAAAGATCAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTATCT 3315573
Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356
||| || ||||| | | | || | ||| | | ||| || |||| ||||||||
Sbjct 3315574 TGGATC-TTGGCTTTGACGTTCTCAATAGTGTCGCTGGGTTCCACCTCCAAGGTGATGGT 3315632
Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| || ||||| || || ||||||||||||||
Sbjct 3315633 CTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 3315665
Score = 82.4 bits (90), Expect = 5e-11
Identities = 135/192 (70%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| ||||||||||||||||| || | || |||| |||||| || |||||
Sbjct 3315703 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCGAAG 3315762
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317
|| | |||||||||||| || | || ||||| || ||| || ||||| | |
Sbjct 3315763 ATCAAACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATC-TTGGCTTTGACGTT 3315821
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| || | || | | || || || | |||||||| ||||| || || || |||||
Sbjct 3315822 CTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTCAC 3315881
Query 34378 AAAGATCTGCAT 34389
|||||||||||
Sbjct 3315882 GAAGATCTGCAT 3315893
>seq183
Length=784777
Score = 95.1 bits (104), Expect = 8e-15
Identities = 140/193 (73%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 34199 TCTTTCTGTATGTTGTAGTCGGAC-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
|||||||| || |||||||||||| || || || | || |||| ||||||||| |||||
Sbjct 332122 TCTTTCTGGATATTGTAGTCGGACAAGGTG-CGTCCATCTTCCAGCTGCTTGCCAGCGAA 332180
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316
|| | || ||||||||| ||| | || || ||||| ||| || ||||| | ||
Sbjct 332181 GATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATC-TTGGCTTTGACAT 332239
Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376
| || | || | | || || || | |||||||| ||||| ||||| || ||||
Sbjct 332240 TCTCAATTGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 332299
Query 34377 CAAAGATCTGCAT 34389
||||||| |||||
Sbjct 332300 CAAAGATTTGCAT 332312
Score = 87.8 bits (96), Expect = 1e-12
Identities = 161/233 (69%), Gaps = 6/233 (3%)
Strand=Plus/Plus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
|||||| | || | |||||||||||| | ||| || ||||| ||||||||||| ||
Sbjct 331625 TCCGCCCCTGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 331684
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA----AATGAGCCGCTGCTGGTCGA 34277
||| || | || |||| ||| ||||| || || || | || |||||| ||
Sbjct 331685 CAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCAACCTCTGCTGATCTG 331744
Query 34278 CGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGAT 34336
||| | || ||| ||||| ||| || ||||| | || | || | ||| | |
Sbjct 331745 GGGGAATGCCCTCTTTGTCTTGGATC-TTGGCTTTGACATTCTCAATGGTGTCGCTTGGC 331803
Query 34337 TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| || || | |||||||| |||||||| || || || || |||||||||||
Sbjct 331804 TCAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTTACGAAGATCTGCAT 331856
Score = 86.0 bits (94), Expect = 4e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||||||||| ||||||||||||||||| || | || |||| ||| ||||| || ||
Sbjct 331893 TTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAA 331952
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317
|| | || |||||| || ||| | || || ||||| ||||| ||| | |
Sbjct 331953 GATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTT 332012
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| || | ||| | | || || || | |||||||| ||||| || || || |||||
Sbjct 332013 CTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 332072
Query 34378 AAAGATCTGCAT 34389
|||||||||||
Sbjct 332073 GAAGATCTGCAT 332084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323029731581600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |