Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq10547 89.7 5e-13 >seq10547 Length=7526941 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | ||| ||||| ||||||| || ||||| | |||| ||| || Sbjct 2162725 TCATCTCTGCTGATGAGCTCATTTGAGTATGTAAGTCCAGGCATCAAACCTCTTTTCTTC 2162784 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| | || || ||||| || ||||| || || || ||||||||||| |||||||| Sbjct 2162785 AGCCAGTAGATGGCAGCAAACGACCCAGAGAAAAAGATGCCTTCAACTGCTGCAAATGCT 2162844 Query 16379 ACCAATCGCTCACC 16392 | ||||| ||| || Sbjct 2162845 ATCAATCTCTCCCC 2162858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462449936671000