Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq10523 318 4e-82 seq10712 140 2e-28 >seq10523 Length=3625887 Score = 318 bits (352), Expect = 4e-82 Identities = 617/893 (69%), Gaps = 22/893 (2%) Strand=Plus/Plus Query 107692 TGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTG 107751 |||| | ||| || |||||||||||| |||| ||| |||||| | ||||||||||||| Sbjct 395468 TGAGCATAGAGGAAAGAGACTTCCCCATCGCCTTCTCCATGGTGATTCATGAGAAGATTG 395527 Query 107752 AAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACG 107811 | | ||||| |||| ||||| ||| | || | ||||||||||| ||||||||||||| Sbjct 395528 AGATGTTTGAGAGGCTCCTGCGTGCCATTTACTCTCCTCAGAACATCTACTGTGTCCACG 395587 Query 107812 TGGATGTGAAGTC-CCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTC 107870 |||| |||||| ||| || ||| | ||||| || ||||| || | || || | Sbjct 395588 TGGACACGAAGTCGTCCAAGGAATTT-ATGGAGGCTGTGAAGGCTATCACATCTTGTCTG 395646 Query 107871 CCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTG 107930 |||||||| || ||||||| || |||| ||||| || ||||||||||| |||| Sbjct 395647 CCCAATGTGTTTGTGGCCAGCAAATTGGAGAGTGTGGTCTACGCCTCCTGGTCTCGAGTT 395706 Query 107931 CAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTA 107990 ||||| ||| | ||||| ||| ||||| | ||| || ||||||| |||| |||| | Sbjct 395707 CAAGCCGACATCAACTGCATGCAAGACCTCCTCAAGTCGTCAGTGCAGTGGAGGTACCTG 395766 Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTC 108050 || || || || || |||| |||||||| || |||||||| |||||||| | |||| Sbjct 395767 CTCAACACTTGTGGTGCAGATTTCCCCATCAAAACCAATGCAGAGATGGTTCGAACCCTG 395826 Query 108051 AAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaT 108110 ||| | | || || | |||||| ||||||||||||| || ||| | |||||| | Sbjct 395827 AAGCAGCTTAACGGGAGGAACAGCATGGAGTCTGAGGCCACTAATGACTACAAAAAGCAG 395886 Query 108111 CGCTGGAAATACCGCTATGAGGTGACAGACACACTGT--ACCCTACCAGC---AAGATGA 108165 |||||| |||| || | || || || |||| | || ||| |||| || Sbjct 395887 CGCTGGGTGTACCAGCATAATGTTAC-TAC-TTCTGTCATTCGGACAAGCATTAAGAAGA 395944 Query 108166 AGGACCCTCCCCCTGAT-AATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCT 108224 || || ||| || || | || |||||||| || || || || ||||| | |||| Sbjct 395945 CAGATCCACCC----ATCAAATCCCCAATGTTCACTGGAAACGCTTACTTTGTCGTCTCT 396000 Query 108225 CGAGCCTTTGTCCA--ACATGTCTTAGACAACCCT-AAATCCCAAAGACTGGTTGAATGG 108281 |||| ||||| | |||||| | || || ||| | |||| || | | |||||| Sbjct 396001 CGAGAGTTTGTGGAGCACATGT-TCAG-CAGTCCTGAGATCCTGAA-CTTCATGGAATGG 396057 Query 108282 GTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGG 108341 | |||||||| || || || || || ||| | ||||| || || ||| | || Sbjct 396058 GAGAAAGACACGTACAGTCCAGATGAGCACATGTGGGCTACACTACAGAGAATGCCCAAC 396117 Query 108342 ATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCC 108401 |||||||| || ||| | || ||||||| || ||||||||| ||||| || Sbjct 396118 ATGCCTGGATCCAATCCACCCAACGGCAAGTATGACGAGTCAGACATGCTGGCCATTGCA 396177 Query 108402 AGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCC 108461 || || || |||||| || | || || || | || | || || || || |||| Sbjct 396178 AGACTGGTGAAGTGGAGTTATCTTGAAGGGGACTTGAGGAAAGGAGCACCGTACCCACCG 396237 Query 108462 TGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATT 108521 ||| |||| || | || | ||| |||| || || |||||| | | |||||| Sbjct 396238 TGCACTGGGGCTCACAGACATGCAGTGTGCGTTTATGGTGCAGGGGACATCAAATGGATT 396297 Query 108522 CTCCAGA-ACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATA 108573 | ||| | | |||||||| || || ||||||||||| ||||| |||| Sbjct 396298 GT-GAGACAGAAACACCTCTTCGCCAATAAGTTTGACCCAGAAGTGGACGATA 396349 >seq10712 Length=1479189 Score = 140 bits (154), Expect = 2e-28 Identities = 288/423 (68%), Gaps = 18/423 (4%) Strand=Plus/Minus Query 107673 AAGTTCATACAGTTCCCACTGAGTA---AAGAAGAGCTAGACTTCCCCATTGCCTACTCG 107729 |||| ||| | ||| |||| ||| | |||||| | |||||| | || || || Sbjct 1209523 AAGTACATGCCTTTCACACTCAGTGCGGAGGAAGAG---GCCTTCCCACTGGCGTATTCC 1209467 Query 107730 ATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCT 107789 || || || ||| | ||| | | ||||| || ||||| ||| || || | || || ||| Sbjct 1209466 ATCGTAGTTCATCACAAGGTGCAGAACTTCGAGCGGCTTCTGAGATCCATCTACGCTCCT 1209407 Query 107790 CAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAA--GAG--GC 107845 |||||| | |||||| |||| |||||| ||| || | ||| |||| ||| || Sbjct 1209406 CAGAACTTTTACTGTATCCATGTGGATAAAAAGGCCTCCGAG----TCAACTCGAGCAGC 1209351 Query 107846 GGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGT 107905 |||| |||| | |||||||| |||||| ||||| |||||| || ||| ||| Sbjct 1209350 AATCAATGCCACCGTCTCCTGCTTTGACAATGTTTTCATTGCCAGTCAGCTGGAAGAGGT 1209291 Query 107906 GGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCA 107965 ||| || ||| |||| | || || |||||| | ||||| ||| | ||| | ||| Sbjct 1209290 GGTCTACGCCAGCTGGAGTCGTGTCCAGGCTGACATCAACTGCATGAAGGACCTTTACCA 1209231 Query 107966 GAGCTCAGTGCCA--TGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAG 108023 || |||||| | ||||||||||| | || || || ||||| ||||| || Sbjct 1209230 GA--TCAGTGACCGCTGGAAGTACTTCATTAACCTTTGTGGTCAGGACTTTCCCATGAAA 1209173 Query 108024 ACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCT 108083 ||||| |||||||| | ||||| ||| |||| | ||| ||||| ||||| || Sbjct 1209172 ACCAACCTGGAGATGGTGCGTGCCCTGAAGGGGTTGCATGGTGGCAACAGCTTGGAGACT 1209113 Query 108084 GAG 108086 ||| Sbjct 1209112 GAG 1209110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348223235013390