Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq10523 318 4e-82
seq10712 140 2e-28
>seq10523
Length=3625887
Score = 318 bits (352), Expect = 4e-82
Identities = 617/893 (69%), Gaps = 22/893 (2%)
Strand=Plus/Plus
Query 107692 TGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTG 107751
|||| | ||| || |||||||||||| |||| ||| |||||| | |||||||||||||
Sbjct 395468 TGAGCATAGAGGAAAGAGACTTCCCCATCGCCTTCTCCATGGTGATTCATGAGAAGATTG 395527
Query 107752 AAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACG 107811
| | ||||| |||| ||||| ||| | || | ||||||||||| |||||||||||||
Sbjct 395528 AGATGTTTGAGAGGCTCCTGCGTGCCATTTACTCTCCTCAGAACATCTACTGTGTCCACG 395587
Query 107812 TGGATGTGAAGTC-CCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTC 107870
|||| |||||| ||| || ||| | ||||| || ||||| || | || || |
Sbjct 395588 TGGACACGAAGTCGTCCAAGGAATTT-ATGGAGGCTGTGAAGGCTATCACATCTTGTCTG 395646
Query 107871 CCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTG 107930
|||||||| || ||||||| || |||| ||||| || ||||||||||| ||||
Sbjct 395647 CCCAATGTGTTTGTGGCCAGCAAATTGGAGAGTGTGGTCTACGCCTCCTGGTCTCGAGTT 395706
Query 107931 CAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTA 107990
||||| ||| | ||||| ||| ||||| | ||| || ||||||| |||| |||| |
Sbjct 395707 CAAGCCGACATCAACTGCATGCAAGACCTCCTCAAGTCGTCAGTGCAGTGGAGGTACCTG 395766
Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTC 108050
|| || || || || |||| |||||||| || |||||||| |||||||| | ||||
Sbjct 395767 CTCAACACTTGTGGTGCAGATTTCCCCATCAAAACCAATGCAGAGATGGTTCGAACCCTG 395826
Query 108051 AAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaT 108110
||| | | || || | |||||| ||||||||||||| || ||| | |||||| |
Sbjct 395827 AAGCAGCTTAACGGGAGGAACAGCATGGAGTCTGAGGCCACTAATGACTACAAAAAGCAG 395886
Query 108111 CGCTGGAAATACCGCTATGAGGTGACAGACACACTGT--ACCCTACCAGC---AAGATGA 108165
|||||| |||| || | || || || |||| | || ||| |||| ||
Sbjct 395887 CGCTGGGTGTACCAGCATAATGTTAC-TAC-TTCTGTCATTCGGACAAGCATTAAGAAGA 395944
Query 108166 AGGACCCTCCCCCTGAT-AATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCT 108224
|| || ||| || || | || |||||||| || || || || ||||| | ||||
Sbjct 395945 CAGATCCACCC----ATCAAATCCCCAATGTTCACTGGAAACGCTTACTTTGTCGTCTCT 396000
Query 108225 CGAGCCTTTGTCCA--ACATGTCTTAGACAACCCT-AAATCCCAAAGACTGGTTGAATGG 108281
|||| ||||| | |||||| | || || ||| | |||| || | | ||||||
Sbjct 396001 CGAGAGTTTGTGGAGCACATGT-TCAG-CAGTCCTGAGATCCTGAA-CTTCATGGAATGG 396057
Query 108282 GTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGG 108341
| |||||||| || || || || || ||| | ||||| || || ||| | ||
Sbjct 396058 GAGAAAGACACGTACAGTCCAGATGAGCACATGTGGGCTACACTACAGAGAATGCCCAAC 396117
Query 108342 ATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCC 108401
|||||||| || ||| | || ||||||| || ||||||||| ||||| ||
Sbjct 396118 ATGCCTGGATCCAATCCACCCAACGGCAAGTATGACGAGTCAGACATGCTGGCCATTGCA 396177
Query 108402 AGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCC 108461
|| || || |||||| || | || || || | || | || || || || ||||
Sbjct 396178 AGACTGGTGAAGTGGAGTTATCTTGAAGGGGACTTGAGGAAAGGAGCACCGTACCCACCG 396237
Query 108462 TGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATT 108521
||| |||| || | || | ||| |||| || || |||||| | | ||||||
Sbjct 396238 TGCACTGGGGCTCACAGACATGCAGTGTGCGTTTATGGTGCAGGGGACATCAAATGGATT 396297
Query 108522 CTCCAGA-ACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATA 108573
| ||| | | |||||||| || || ||||||||||| ||||| ||||
Sbjct 396298 GT-GAGACAGAAACACCTCTTCGCCAATAAGTTTGACCCAGAAGTGGACGATA 396349
>seq10712
Length=1479189
Score = 140 bits (154), Expect = 2e-28
Identities = 288/423 (68%), Gaps = 18/423 (4%)
Strand=Plus/Minus
Query 107673 AAGTTCATACAGTTCCCACTGAGTA---AAGAAGAGCTAGACTTCCCCATTGCCTACTCG 107729
|||| ||| | ||| |||| ||| | |||||| | |||||| | || || ||
Sbjct 1209523 AAGTACATGCCTTTCACACTCAGTGCGGAGGAAGAG---GCCTTCCCACTGGCGTATTCC 1209467
Query 107730 ATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCT 107789
|| || || ||| | ||| | | ||||| || ||||| ||| || || | || || |||
Sbjct 1209466 ATCGTAGTTCATCACAAGGTGCAGAACTTCGAGCGGCTTCTGAGATCCATCTACGCTCCT 1209407
Query 107790 CAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAA--GAG--GC 107845
|||||| | |||||| |||| |||||| ||| || | ||| |||| ||| ||
Sbjct 1209406 CAGAACTTTTACTGTATCCATGTGGATAAAAAGGCCTCCGAG----TCAACTCGAGCAGC 1209351
Query 107846 GGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGT 107905
|||| |||| | |||||||| |||||| ||||| |||||| || ||| |||
Sbjct 1209350 AATCAATGCCACCGTCTCCTGCTTTGACAATGTTTTCATTGCCAGTCAGCTGGAAGAGGT 1209291
Query 107906 GGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCA 107965
||| || ||| |||| | || || |||||| | ||||| ||| | ||| | |||
Sbjct 1209290 GGTCTACGCCAGCTGGAGTCGTGTCCAGGCTGACATCAACTGCATGAAGGACCTTTACCA 1209231
Query 107966 GAGCTCAGTGCCA--TGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAG 108023
|| |||||| | ||||||||||| | || || || ||||| ||||| ||
Sbjct 1209230 GA--TCAGTGACCGCTGGAAGTACTTCATTAACCTTTGTGGTCAGGACTTTCCCATGAAA 1209173
Query 108024 ACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCT 108083
||||| |||||||| | ||||| ||| |||| | ||| ||||| ||||| ||
Sbjct 1209172 ACCAACCTGGAGATGGTGCGTGCCCTGAAGGGGTTGCATGGTGGCAACAGCTTGGAGACT 1209113
Query 108084 GAG 108086
|||
Sbjct 1209112 GAG 1209110
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 348223235013390
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |