Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq10555 125 6e-24
seq183 107 2e-18
>seq10555
Length=3328687
Score = 125 bits (138), Expect = 6e-24
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || ||| ||||||||| |||||||||||| ||| ||| |||| |||
Sbjct 3318435 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 3318494
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| |||| ||||| |||||||| || | |||||||| ||
Sbjct 3318495 AGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCTTGG 3318554
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || || || | | | | |||| | ||||||||||| ||| || |||||
Sbjct 3318555 ATCTTGGCTTTGACGTTCTCGATGGTGTCGCTTGGCTCCACCTCCAAGGTGATGGTCTTA 3318614
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339
|| ||||| |||||||||||||| ||||| ||
Sbjct 3318615 CCAGTCAGCGTCTTCACAAAGATCTGCATCTT 3318646
Score = 109 bits (120), Expect = 4e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193
|| || ||| ||||||||| |||||||||||| ||| ||| | || ||||| ||
Sbjct 3315691 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGC 3315750
Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253
|| || ||||| ||||| ||||| ||||||||||| | || ||||| ||| || ||
Sbjct 3315751 TTACCAGCGAAGATCAAACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTTG 3315810
Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313
|| || | | | | |||| | |||||| || | || || |||||||| |||
Sbjct 3315811 GCTTTGACGTTCTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTCTTGCCAGTC 3315870
Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336
|| |||||||| ||||| |||||
Sbjct 3315871 AGCGTCTTCACGAAGATCTGCAT 3315893
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193
|| || ||| ||||||||| |||||||||||| ||| ||| | || ||||| ||
Sbjct 3315235 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGC 3315294
Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253
|| || || || |||| ||||| |||||||| || | |||||||| ||| |||||
Sbjct 3315295 TTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCCTGGATTTTA 3315354
Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313
||| || | | | |||| | |||||| || | || || ||||| || |||
Sbjct 3315355 GCCTTCACATTTTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTCTTACCAGTC 3315414
Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336
|| |||||||| ||||| |||||
Sbjct 3315415 AGCGTCTTCACGAAGATCTGCAT 3315437
>seq183
Length=784777
Score = 107 bits (118), Expect = 2e-18
Identities = 150/209 (72%), Gaps = 1/209 (0%)
Strand=Plus/Plus
Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188
|||| ||||| ||| || ||||| |||||||||||| ||| ||| | || ||||
Sbjct 331877 CAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCA 331936
Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248
| ||||| ||||| || ||||||| ||| || || || || | || || |||||| |
Sbjct 331937 GCTGTTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGA 331996
Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308
| || ||| || | | | | |||| | ||| ||||| | ||| || |||||||
Sbjct 331997 TCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGGTCTTGC 332056
Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337
| ||||| |||||||| ||||| ||||||
Sbjct 332057 CAGTCAGGGTCTTCACGAAGATCTGCATG 332085
Score = 93.3 bits (102), Expect = 3e-14
Identities = 149/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || ||| ||||||||| ||||||||||| ||| ||| | || |||
Sbjct 331644 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 331703
Query 45188 AGTTGTTTTCCGGCGAATAT----CAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243
|| ||||| ||||| || || ||||| ||| || || || || | ||||| |||||
Sbjct 331704 AGCTGTTTGCCGGCAAAGATCAACCAACCTCTGCTGATCTGGGGGAATGCCCTCTTTGTC 331763
Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303
|| || || || | | | | |||| | ||| ||||| | ||| || ||
Sbjct 331764 TTGGATCTTGGCTTTGACATTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGT 331823
Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|||||| ||||| ||||| || ||||| ||||||
Sbjct 331824 CTTGCCGGTCAGGGTCTTTACGAAGATCTGCATG 331857
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395023511200435
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |