Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq10555 114 1e-20 seq183 107 2e-18 >seq10555 Length=3328687 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || ||||| |||| || || || Sbjct 3315893 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTCGAAGTGGAGCCAAGT 3315834 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | || ||| ||||||||| | || ||||||||| Sbjct 3315833 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCAG 3315774 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 |||||| | || |||||||| || ||| ||||||| | | | || || ||| || || Sbjct 3315773 CAGCGTTTGATCTTCGCTGGTAAGCAGCTGGAAGA-TGGACGCACCCTGTCCGACTACAA 3315715 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || || || ||||| || || | |||||||| |||| Sbjct 3315714 CATCCAGAAGGAGTCCACCCTCCATCTCGTCCTCCGTCTGAGGGGAGGTA 3315665 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || || ||||| ||||| || || || |||||| | || || || || Sbjct 3318647 AAAGATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATCACCTTGGAGGTGGAGCC 3318588 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| |||| | |||||| | || || ||||| || | || ||||| Sbjct 3318587 AAGCGACACCATCGAGAACGTCAAAGCCAAGATCCAAGATAAGGAGGGAATCCCACCCGA 3318528 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||||||||| || |||||||| || ||| |||||||| || || ||| || Sbjct 3318527 CCAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAAGACGGACGCACCCTGTCCGACTA 3318468 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || || || || || ||||| ||| | |||||||| |||| Sbjct 3318467 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTTCGTCTGAGGGGAGGTA 3318415 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| || || || ||||| |||| || || || Sbjct 3315437 ATGCAGATCTTCGTGAAGACGCTGACTGGTAAGACCATCACTCTCGAAGTGGAGCCAAGT 3315378 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || || | ||| ||| ||||| || | || ||||||||| Sbjct 3315377 GACACCATTGAAAATGTGAAGGCTAAAATCCAGGATAAGGAGGGAATCCCACCCGACCAG 3315318 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 |||||||| || || ||||| || ||| ||||||| | | | || || ||| || || Sbjct 3315317 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGA-TGGACGCACCCTGTCCGACTACAA 3315259 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || ||||| || || Sbjct 3315258 CATCCAGAAGGAGTCCACCCTCCATCTCGTCCT 3315226 >seq183 Length=784777 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| || || ||||| || |||||| | || ||||| || Sbjct 332312 ATGCAAATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGT 332253 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | || |||||| |||||| | || || |||||| Sbjct 332252 GACACAATTGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 332193 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||| | | || ||||||||||| ||| ||||||| | | | || || ||| || || Sbjct 332192 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGA-TGGACGCACCTTGTCCGACTACAA 332134 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || ||||| || ||||| ||||| || ||| | || ||||| || Sbjct 332133 TATCCAGAAAGAGTCCACTCTCCATCTTGTCCTTCGTCTCAGGGGAGG 332086 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/232 (68%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||||||||| ||||| ||||| || |||||| | || ||||| || Sbjct 331857 CATGCAGATCTTCGTAAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTTGAGCCAAG 331798 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | |||||| | || ||||| || ||| | || || || || Sbjct 331797 CGACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATTCCCCCAGATCA 331738 Query 31312 GCAG----CGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||| | | || || || ||||||||| ||||||| || || || | Sbjct 331737 GCAGAGGTTGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACT 331678 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | ||||| || || || || ||||| || ||||| || | || |||||||| Sbjct 331677 ACAACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGTCTCAGGGGCGG 331626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445706583721200