Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq10555 114 1e-20
seq183 107 2e-18
>seq10555
Length=3328687
Score = 114 bits (126), Expect = 1e-20
Identities = 165/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| ||||| ||||| || ||||| |||| || || ||
Sbjct 3315893 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTCGAAGTGGAGCCAAGT 3315834
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | |||||| | || ||| ||||||||| | || |||||||||
Sbjct 3315833 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCAG 3315774
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371
|||||| | || |||||||| || ||| ||||||| | | | || || ||| || ||
Sbjct 3315773 CAGCGTTTGATCTTCGCTGGTAAGCAGCTGGAAGA-TGGACGCACCCTGTCCGACTACAA 3315715
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||| || || || || || || ||||| || || | |||||||| ||||
Sbjct 3315714 CATCCAGAAGGAGTCCACCCTCCATCTCGTCCTCCGTCTGAGGGGAGGTA 3315665
Score = 114 bits (126), Expect = 1e-20
Identities = 165/233 (71%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248
||| ||||| || || || ||||| ||||| || || || |||||| | || || || ||
Sbjct 3318647 AAAGATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATCACCTTGGAGGTGGAGCC 3318588
Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308
||||| |||| | |||||| | || || ||||| || | || |||||
Sbjct 3318587 AAGCGACACCATCGAGAACGTCAAAGCCAAGATCCAAGATAAGGAGGGAATCCCACCCGA 3318528
Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368
|||||||||||| || |||||||| || ||| |||||||| || || ||| ||
Sbjct 3318527 CCAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAAGACGGACGCACCCTGTCCGACTA 3318468
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| || || || || || || || ||||| ||| | |||||||| ||||
Sbjct 3318467 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTTCGTCTGAGGGGAGGTA 3318415
Score = 89.7 bits (98), Expect = 5e-13
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| ||||| || || || ||||| |||| || || ||
Sbjct 3315437 ATGCAGATCTTCGTGAAGACGCTGACTGGTAAGACCATCACTCTCGAAGTGGAGCCAAGT 3315378
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | |||| || || | ||| ||| ||||| || | || |||||||||
Sbjct 3315377 GACACCATTGAAAATGTGAAGGCTAAAATCCAGGATAAGGAGGGAATCCCACCCGACCAG 3315318
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371
|||||||| || || ||||| || ||| ||||||| | | | || || ||| || ||
Sbjct 3315317 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGA-TGGACGCACCCTGTCCGACTACAA 3315259
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || || || || || ||||| || ||
Sbjct 3315258 CATCCAGAAGGAGTCCACCCTCCATCTCGTCCT 3315226
>seq183
Length=784777
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || || ||||| || || ||||| || |||||| | || ||||| ||
Sbjct 332312 ATGCAAATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGT 332253
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | |||||| | || |||||| |||||| | || || ||||||
Sbjct 332252 GACACAATTGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 332193
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371
||| | | || ||||||||||| ||| ||||||| | | | || || ||| || ||
Sbjct 332192 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGA-TGGACGCACCTTGTCCGACTACAA 332134
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| || ||||| || ||||| ||||| || ||| | || ||||| ||
Sbjct 332133 TATCCAGAAAGAGTCCACTCTCCATCTTGTCCTTCGTCTCAGGGGAGG 332086
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/232 (68%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||||||||| ||||| ||||| || |||||| | || ||||| ||
Sbjct 331857 CATGCAGATCTTCGTAAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTTGAGCCAAG 331798
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||||| | || | |||||| | || ||||| || ||| | || || || ||
Sbjct 331797 CGACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATTCCCCCAGATCA 331738
Query 31312 GCAG----CGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
|||| | | || || || ||||||||| ||||||| || || || |
Sbjct 331737 GCAGAGGTTGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACT 331678
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
| ||||| || || || || ||||| || ||||| || | || ||||||||
Sbjct 331677 ACAACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGTCTCAGGGGCGG 331626
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445706583721200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |