Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq10607 102 1e-16 seq4474 93.3 5e-14 >seq10607 Length=2140885 Score = 102 bits (112), Expect = 1e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 63661 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 63720 |||| || ||||| || | |||||||||||||| || |||||||| ||||| || || | Sbjct 832235 TAGTGCCTGCATTGAAGAGTGTAGGAGAAGCGTGGGTGAACCATTTCTCAGACAGCAGGT 832294 Query 63721 TGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 63780 |||| ||||||||||| | | ||||| | ||| || || ||||| || | ||| | Sbjct 832295 TGTAGGTCTCAATAGCAGCAGCAATATCTTCCTTATGGATCCCAACTGCTACCCTCATCA 832354 Query 63781 ACATGTGCTGAGGTCTTTC 63799 ||||||||| || ||||| Sbjct 832355 GCATGTGCTGTGGCCTTTC 832373 Score = 89.7 bits (98), Expect = 6e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || ||||| ||||| ||||||||||||||||| ||||| ||| || ||||| | || Sbjct 831352 CTCCACTCTCTTCATGAAGAGATCAGGAATCCACAGAGCATAAAACAGGTCTCTGGCCCT 831411 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || || || || || || ||||| || || || ||||| | | || ||| | ||||| Sbjct 831412 CTGCTCTTCTTTACCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAAGATGTCAAAGTGCCA 831471 Query 63383 CGGTTCCAAGTATATGGCCATAACTCCAGGCC 63414 || || | ||| ||||| | ||||||||| Sbjct 831472 TGGCTCAAGGTACATGGCAAATGCTCCAGGCC 831503 >seq4474 Length=14602 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | || || || || || || || ||||| || || | ||||| Sbjct 5246 CCTCATCTCTGCTGATGAGCTCATTGGAGAAGGTAAGGCCAGGCATGAGTCCTCTCTTTT 5187 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||| ||| || || || || |||||||||||||| || |||||||||| Sbjct 5186 TGAGCCAGAAGATGGCAGCAAAAGAACCTGAGAAGAAGATTCCTTCCACAGCAGCAAAGG 5127 Query 33724 C 33724 | Sbjct 5126 C 5126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629733086350800