Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq10607 100 3e-16 seq10547 89.7 5e-13 >seq10607 Length=2140885 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| || ||||| | ||||| | ||| || | ||||||||| ||||| |||||| Sbjct 829712 ACCTGAAACTCCCCAGAGAGCACTCTGCGTGTGTAGAAATTGCTAGTGTATGGCTCAATG 829771 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||||| | ||||| | ||| || || || ||||| ||||| | ||||| Sbjct 829772 GACTCATTATTACCCAGAATTTGGGCTGTGGAAGCGGTGGGCATCGGTGCAAGCAGAAGA 829831 Query 37258 CTATT 37262 || || Sbjct 829832 CTGTT 829836 >seq10547 Length=7526941 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || || ||||| || |||| | ||| |||||||| |||| ||| || Sbjct 2162725 TCATCTCTGCTGATGAGCTCATTTGAGTATGTAAGTCCAGGCATCAAACCTCTTTTCTTC 2162784 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| | || |||||||| || ||||| || || || || || || |||||||||||| Sbjct 2162785 AGCCAGTAGATGGCAGCAAACGACCCAGAGAAAAAGATGCCTTCAACTGCTGCAAATGCT 2162844 Query 11774 ACTACTCTTTCTCC 11787 | | ||| || || Sbjct 2162845 ATCAATCTCTCCCC 2162858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468461929828400