Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq183 111 2e-19
seq10555 104 2e-17
>seq183
Length=784777
Score = 111 bits (122), Expect = 2e-19
Identities = 166/234 (71%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594
|| ||||| | | ||||| || | ||| | || ||||| || || ||||| || ||
Sbjct 331623 TGTCCGCCCCTGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCA 331682
Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAG---ACGT-TGCTGATC 139650
|| |||| | ||||| |||||||| || ||| |||||| || | ||||||||
Sbjct 331683 GACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCAACCTCTGCTGATC 331742
Query 139651 GGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGG 139710
|| || ||||| |||||||| ||| || ||| | | || | |||||| | ||
Sbjct 331743 TGGGGGAATGCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCGCTTGG 331802
Query 139711 CTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| ||||||| ||| | ||||||||||||| || |||||||| || |||||
Sbjct 331803 CTCAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTTACGAAGATCTGCAT 331856
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| || ||||| || ||||| || ||| || |||| | ||||| |||||||| ||
Sbjct 331888 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCG 331947
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||||| | |||||||| || || |||||||||||||| ||| || ||
Sbjct 331948 GCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTC 332007
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | |||||| | ||||| ||||| | ||| | |||||||| |||| ||
Sbjct 332008 ACGTTCTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 332067
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 332068 TTCACGAAGATCTGCAT 332084
Score = 98.7 bits (108), Expect = 1e-15
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626
|| |||||||| || || || || ||| || |||| || | ||||| ||||| || ||
Sbjct 332116 GTGGACTCTTTCTGGATATTGTAGTCGGACAAGGTGCGTCCA-TCTTCCAGCTGCTTGCC 332174
Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686
||| |||||| | ||||| || || || |||||||||||||| ||| || |||
Sbjct 332175 AGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCTTT 332234
Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
| | || | |||||| | ||||| ||||||| ||| | |||||||| || | ||
Sbjct 332235 GACATTCTCAATTGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGT 332294
Query 139747 TTTTACGAATATTTGCAT 139764
|| || || ||||||||
Sbjct 332295 CTTCACAAAGATTTGCAT 332312
>seq10555
Length=3328687
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| || || ||||| || ||| || |||| |||||| ||||| ||||||
Sbjct 3318447 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCCAGCTGCTTACCA 3318506
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
|| |||||||||| ||||| ||||| || || || || || || ||| || |||
Sbjct 3318507 GCGAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCTTGGATCTTGGCTTTG 3318566
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | |||||| | ||||||||||| | ||| | ||||| || |||| |||
Sbjct 3318567 ACGTTCTCGATGGTGTCGCTTGGCTCCACCTCCAAGGTGATGGTCTTACCAGTCAGCGTC 3318626
Query 139748 TTTACGAATATTTGCAT 139764
|| || || || |||||
Sbjct 3318627 TTCACAAAGATCTGCAT 3318643
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495997434412000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |