Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq10607 102 1e-16 seq4474 102 1e-16 >seq10607 Length=2140885 Score = 102 bits (112), Expect = 1e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 80333 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 80392 |||| || ||||| || | |||||||||||||| || |||||||| |||||||| || | Sbjct 832235 TAGTGCCTGCATTGAAGAGTGTAGGAGAAGCGTGGGTGAACCATTTCTCAGACAGCAGGT 832294 Query 80393 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTA 80452 |||| ||||||||||| | | ||||| | ||| || || || || || | ||| | Sbjct 832295 TGTAGGTCTCAATAGCAGCAGCAATATCTTCCTTATGGATCCCAACTGCTACCCTCATCA 832354 Query 80453 ACATGTGCTGAGGTCTTTC 80471 ||||||||| || ||||| Sbjct 832355 GCATGTGCTGTGGCCTTTC 832373 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 |||| ||||| ||||||||||||||||| ||||| ||| || ||||||| || ||| Sbjct 831356 ACTCTCTTCATGAAGAGATCAGGAATCCACAGAGCATAAAACAGGTCTCTGGCCCTCTGC 831415 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || || || || ||||| || || || ||||| | | || ||| | ||||| || Sbjct 831416 TCTTCTTTACCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAAGATGTCAAAGTGCCATGGC 831475 Query 80059 TCCAAGTATATGGC 80072 || | ||| ||||| Sbjct 831476 TCAAGGTACATGGC 831489 >seq4474 Length=14602 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || || || ||||| || || || || ||||| || || | ||||| Sbjct 5246 CCTCATCTCTGCTGATGAGCTCATTGGAGAAGGTAAGGCCAGGCATGAGTCCTCTCTTTT 5187 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| ||||| || || || |||||||||||||| || || ||||||| Sbjct 5186 TGAGCCAGAAGATGGCAGCAAAAGAACCTGAGAAGAAGATTCCTTCCACAGCAGCAAAGG 5127 Query 50102 CAACAAGTCTCTCTCC 50117 | || | ||| || || Sbjct 5126 CCACCACTCTTTCACC 5111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718172417305400