Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq10607 98.7 1e-15
seq4474 93.3 6e-14
>seq10607
Length=2140885
Score = 98.7 bits (108), Expect = 1e-15
Identities = 105/139 (76%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 72416 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 72475
|||| || ||||| || | |||||||||||||| || |||||||| |||||||| || |
Sbjct 832235 TAGTGCCTGCATTGAAGAGTGTAGGAGAAGCGTGGGTGAACCATTTCTCAGACAGCAGGT 832294
Query 72476 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTA 72535
|||| ||||||||||| | | ||||| | ||| || || || || || | ||| |
Sbjct 832295 TGTAGGTCTCAATAGCAGCAGCAATATCTTCCTTATGGATCCCAACTGCTACCCTCATCA 832354
Query 72536 ACATATGCTGAGGTCTTTC 72554
||| ||||| || |||||
Sbjct 832355 GCATGTGCTGTGGCCTTTC 832373
Score = 91.5 bits (100), Expect = 2e-13
Identities = 109/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
|||| ||||| ||||||||||||||||| ||||| ||| || ||||||| || |||
Sbjct 831356 ACTCTCTTCATGAAGAGATCAGGAATCCACAGAGCATAAAACAGGTCTCTGGCCCTCTGC 831415
Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141
|| || || || || ||||| || || || ||||| | | || ||| | ||||| ||
Sbjct 831416 TCTTCTTTACCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAAGATGTCAAAGTGCCATGGC 831475
Query 72142 TCCAAGTATATGGCCATAACTCCCGGCC 72169
|| | ||| ||||| | |||| ||||
Sbjct 831476 TCAAGGTACATGGCAAATGCTCCAGGCC 831503
Score = 86.0 bits (94), Expect = 8e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201
||| ||||| || ||||| | ||||| || ||||| | ||| || || || || || |
Sbjct 829711 TACCTGAAACTCCCCAGAGAGCACTCTGCGTGTGTAGAAATTGCTAGTGTATGGCTCAAT 829770
Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261
||||||||||| |||| |||||| || || || || || ||||| ||||| | || ||
Sbjct 829771 GGACTCATTATTACCCAGAATTTGGGCTGTGGAAGCGGTGGGCATCGGTGCAAGCAGAAG 829830
Query 71262 ACTATTTCTAAGACCAT 71278
||| || | | |||||
Sbjct 829831 ACTGTTACGGATACCAT 829847
>seq4474
Length=14602
Score = 93.3 bits (102), Expect = 6e-14
Identities = 93/121 (77%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||||||||| || || | || ||||| || || || || ||||| || || | |||||
Sbjct 5246 CCTCATCTCTGCTGATGAGCTCATTGGAGAAGGTAAGGCCAGGCATGAGTCCTCTCTTTT 5187
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||| || || | ||||| || || || |||||||||||||| || || |||||||
Sbjct 5186 TGAGCCAGAAGATGGCAGCAAAAGAACCTGAGAAGAAGATTCCTTCCACAGCAGCAAAGG 5127
Query 42207 C 42207
|
Sbjct 5126 C 5126
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671049141508600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |