Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4474 87.8 3e-12 seq10547 84.2 3e-11 >seq4474 Length=14602 Score = 87.8 bits (96), Expect = 3e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 || ||| ||||||| || || || || || || |||||||| || ||| |||||| ||| Sbjct 5114 GAAAGAGTGGTGGCCTTTGCTGCTGTGGAAGGAATCTTCTTCTCAGGTTCTTTTGCTGCC 5173 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 ||||| |||||||| ||| | ||||||||||| || || || Sbjct 5174 ATCTTCTGGCTCAAAAAGAGAGGACTCATGCCTGGCCTTAC 5214 >seq10547 Length=7526941 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 124983 AGTAGATTTACCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCT 125042 || |||||| | | ||||||||| ||| | ||||| ||| ||||||||||| |||| Sbjct 2167302 AGAAGATTTGTCATCTTTCCCATCCAGTACCCAGACATCTGGAAAATGTACAAACAGGCC 2167243 Query 125043 CAGGCCTCCTTTTGGACGGTCGAAGAGGT 125071 ||||||||||| ||||| || |||||||| Sbjct 2167242 CAGGCCTCCTTCTGGACAGTAGAAGAGGT 2167214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740959759118600