Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq183 89.7 4e-13
>seq183
Length=784777
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
||| |||||||| ||||| || |||||||| ||| || | | | | ||||| | ||
Sbjct 331881 ATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTG 331940
Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279
|||||| || | ||||| | || || || ||||| ||||||||||| || ||
Sbjct 331941 TTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGATCTT 332000
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
| ||| || | || ||||| ||||| || || || | ||| ||||| || || ||
Sbjct 332001 GGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGGTCTTGCCAGT 332060
Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363
||| || || || || || |||||
Sbjct 332061 CAGGGTCTTCACGAAGATCTGCAT 332084
Score = 82.4 bits (90), Expect = 6e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
||| || ||||| ||||| || || ||||| ||| | | | | ||||| | ||
Sbjct 332109 ATGGAGAGTGGACTCTTTCTGGATATTGTAGTCGGACAAGGTGCGTCCATCTTCCAGCTG 332168
Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279
||||||||| | ||||| | || ||||| ||||| ||||||||||| || ||
Sbjct 332169 CTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATCTT 332228
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
| || ||| | || || || || || || || || | ||| ||||| || || ||
Sbjct 332229 GGCTTTGACATTCTCAATTGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGT 332288
Query 15340 CAGAGTTTTTACAAAAATTTGCATATTTGAAAATA 15374
|| || || ||||| |||||||| | || |||||
Sbjct 332289 GAGGGTCTTCACAAAGATTTGCATTTCTGCAAATA 332323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362131815076635
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |