Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq183 89.7 4e-13 >seq183 Length=784777 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| ||||| || |||||||| ||| || | | | | ||||| | || Sbjct 331881 ATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTG 331940 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||| || | ||||| | || || || ||||| ||||||||||| || || Sbjct 331941 TTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGATCTT 332000 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || | || ||||| ||||| || || || | ||| ||||| || || || Sbjct 332001 GGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGGTCTTGCCAGT 332060 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || || || || ||||| Sbjct 332061 CAGGGTCTTCACGAAGATCTGCAT 332084 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| ||||| || || ||||| ||| | | | | ||||| | || Sbjct 332109 ATGGAGAGTGGACTCTTTCTGGATATTGTAGTCGGACAAGGTGCGTCCATCTTCCAGCTG 332168 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||||||| | ||||| | || ||||| ||||| ||||||||||| || || Sbjct 332169 CTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATCTT 332228 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | || ||| | || || || || || || || || | ||| ||||| || || || Sbjct 332229 GGCTTTGACATTCTCAATTGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGT 332288 Query 15340 CAGAGTTTTTACAAAAATTTGCATATTTGAAAATA 15374 || || || ||||| |||||||| | || ||||| Sbjct 332289 GAGGGTCTTCACAAAGATTTGCATTTCTGCAAATA 332323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362131815076635