Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq10513 125 1e-23 seq10511 113 6e-20 seq10503 91.5 2e-13 >seq10513 Length=4150252 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| || ||| | || ||| ||| || ||||| || |||| |||| ||||| || Sbjct 2694174 GTCTGGAAGAGTCGCTCATCATCCCAGTCCGGATGCTCCTGTTTAAGAATGTCGCAGACG 2694115 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 | ||||||||||| ||||| || || || ||||||||||| || || |||| ||| || Sbjct 2694114 CGGTTGTGTTCCCGAAGCCAAATTGTCGCATACATCATGAGGCCTGGGACCAAGCCGAAG 2694055 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 || || || || ||||| | || | || ||||| | ||||||||| ||||| | Sbjct 2694054 GCTTCATGGCCCACAGCAAAGCGGTGAGACTCAGGCACGTGAGGAGGATAGTGCATGTCC 2693995 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| ||||| |||| | || || || | ||||| || | ||||| Sbjct 2693994 ACCTGAACATCACTGACAGTAGGTGGGTATACCTCACCATCCAGAATCT 2693946 Score = 123 bits (136), Expect = 4e-23 Identities = 194/278 (70%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 8698 CCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCC 8757 ||| |||||||| | ||||| || ||| | | ||| | || | || |||| || Sbjct 2696738 CCCCTTGACGTTATTGCAGACCAGCTTCTGCAGTGAGGCAGTGTTTATAATATCAAATCC 2696679 Query 8758 CACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCAT 8817 || | || ||||| |||||||| |||||||| | |||||||| ||| ||| |||| Sbjct 2696678 AACTTTGCCACCGAATGTGCTGGGCTTCCAGTACTCAGGGGAGCAAATGGGGTTTCCCAT 2696619 Query 8818 GAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTT 8877 |||||||| || || | || || |||| ||| | ||| | || |||||||||||||| Sbjct 2696618 AAGGCCTTTCAGAGAGTATGGGGCACCCATCTCCACCATGGTTTCCCCGAAGATGGCGTT 2696559 Query 8878 GGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTA 8937 | | || || ||||| | | |||||||| | |||||| || || | ||||| || Sbjct 2696558 CTGTCTAGGTTTCTCCACTAGCAGACCGGTGTATAGCTCCACGGCGTCCACCTCTCCATA 2696499 Query 8938 AAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || || || || || || ||||| || |||| Sbjct 2696498 CAGCTCCTCCAGCTCTGCCGCCATCTCCTTCTCACCTG 2696461 >seq10511 Length=4527151 Score = 113 bits (124), Expect = 6e-20 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 8735 GCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCC 8794 || || || || || | |||||||| || ||||| |||||||| ||||||| | Sbjct 1118255 GCGCTGTTCACTATATCGAACCCCACCGTGCCACCGAACGTGCTGGGCATCCAGTACTCA 1118314 Query 8795 GGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGA 8854 |||||||||||| ||| ||| |||||||| ||||| || ||||| |||| ||| | Sbjct 1118315 GGGGAGCAGATGGGGTTTCCCAGCAGGCCTTTCAGGGAGAAGGGAGCTCCCATCTCCACC 1118374 Query 8855 ATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAAC 8914 ||| |||| ||||| | || ||| | |||||| ||||||| | || | ||||| | Sbjct 1118375 ATGGTCTCTCCGAACACAGCCCCGGGCCTGGGCTTCTCCACCAGCAGCCCAGAGTACAGC 1118434 Query 8915 TCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 ||||| ||| | ||||| || || | || || || || | ||||| |||||| Sbjct 1118435 TCCACCAGCTCCACATCTCCATACAGCTTCTCCAGCTCCGCCGCCAGCTCCTTATCTCCT 1118494 Score = 105 bits (116), Expect = 9e-18 Identities = 169/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 || || || |||||||| || | | || || ||| || ||||| || |||| Sbjct 1120760 ATAAGCCGTGTGGTCTGGAAGATGCGCTCATCGTCCCAGTCGGGATGCTCCTCCTTCATG 1120819 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||||||||| |||||||| || ||||||||||| || ||||| Sbjct 1120820 ATGTCACAAACACGGTTGTGTTCCCTCAGCCAGATGGTGGCGTACATCATCAGGCCAGGG 1120879 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 ||||| || || ||||| ||||| ||||| | || || || || | ||||| Sbjct 1120880 ACCAGACCGAAGGCCTCGTGACCCACAGCGAATCGGTGCACCTCAGGGACGTGAGGAGGG 1120939 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 || ||| | |||||| || ||||| ||| || ||||||| || || || | || | Sbjct 1120940 TAATGCATCTCCACCTGAACGTCTTTAACCAGCGGTGGATACACCTCGCCATCCACAACC 1120999 Query 9862 TGA 9864 ||| Sbjct 1121000 TGA 1121002 >seq10503 Length=4519180 Score = 91.5 bits (100), Expect = 2e-13 Identities = 175/253 (69%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 || ||||| ||||||| |||||||||||||| || ||||| | ||| || || ||| Sbjct 1201665 CCTATAATAATGAGTCTGGTGGTCTGAAACAGCTGCTCGTCTCCCCAGGTGGGGTGCTCT 1201606 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732 ||||| | || || || | |||||| |||| ||||| | || || ||||| | Sbjct 1201605 TCCTTCAGGATGTCACAGACACGGTTGTGCTCCCGCAGCCACAGGGTGGCATACATGCTT 1201546 Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCG-GGCAC 9791 ||||| |||| ||| ||||| |||| || || | |||| || | || | | || || Sbjct 1201545 AGACCTGGCAGCAGCCCAAACACCTCCTGGCCTATGGCCATCTGC-TGTTCTGGAGGGAC 1201487 Query 9792 TTCGGGAGGATAGATCATGTGCAC-CTGGACATCTTTGACCGAGGGGGGATACATTTCAC 9850 | ||||| || |||| | ||| | ||| ||| || | |||||| ||||| || | Sbjct 1201486 TGATGGAGGGTAACTCATATTCACGTTTGAC-TCTGCCACGGTGGGGGGGTACATCTCTC 1201428 Query 9851 CGTCAATAATCTG 9863 | | || ||||| Sbjct 1201427 CCTTTATGATCTG 1201415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708429724828400