Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq10513 125 1e-23
seq10511 113 6e-20
seq10503 91.5 2e-13
>seq10513
Length=4150252
Score = 125 bits (138), Expect = 1e-23
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
||||| || ||| | || ||| ||| || ||||| || |||| |||| ||||| ||
Sbjct 2694174 GTCTGGAAGAGTCGCTCATCATCCCAGTCCGGATGCTCCTGTTTAAGAATGTCGCAGACG 2694115
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
| ||||||||||| ||||| || || || ||||||||||| || || |||| ||| ||
Sbjct 2694114 CGGTTGTGTTCCCGAAGCCAAATTGTCGCATACATCATGAGGCCTGGGACCAAGCCGAAG 2694055
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
|| || || || ||||| | || | || ||||| | ||||||||| ||||| |
Sbjct 2694054 GCTTCATGGCCCACAGCAAAGCGGTGAGACTCAGGCACGTGAGGAGGATAGTGCATGTCC 2693995
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862
||||| ||||| |||| | || || || | ||||| || | |||||
Sbjct 2693994 ACCTGAACATCACTGACAGTAGGTGGGTATACCTCACCATCCAGAATCT 2693946
Score = 123 bits (136), Expect = 4e-23
Identities = 194/278 (70%), Gaps = 0/278 (0%)
Strand=Plus/Minus
Query 8698 CCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCC 8757
||| |||||||| | ||||| || ||| | | ||| | || | || |||| ||
Sbjct 2696738 CCCCTTGACGTTATTGCAGACCAGCTTCTGCAGTGAGGCAGTGTTTATAATATCAAATCC 2696679
Query 8758 CACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCAT 8817
|| | || ||||| |||||||| |||||||| | |||||||| ||| ||| ||||
Sbjct 2696678 AACTTTGCCACCGAATGTGCTGGGCTTCCAGTACTCAGGGGAGCAAATGGGGTTTCCCAT 2696619
Query 8818 GAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTT 8877
|||||||| || || | || || |||| ||| | ||| | || ||||||||||||||
Sbjct 2696618 AAGGCCTTTCAGAGAGTATGGGGCACCCATCTCCACCATGGTTTCCCCGAAGATGGCGTT 2696559
Query 8878 GGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTA 8937
| | || || ||||| | | |||||||| | |||||| || || | ||||| ||
Sbjct 2696558 CTGTCTAGGTTTCTCCACTAGCAGACCGGTGTATAGCTCCACGGCGTCCACCTCTCCATA 2696499
Query 8938 AAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975
|| || || || || || || ||||| || ||||
Sbjct 2696498 CAGCTCCTCCAGCTCTGCCGCCATCTCCTTCTCACCTG 2696461
>seq10511
Length=4527151
Score = 113 bits (124), Expect = 6e-20
Identities = 169/240 (70%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 8735 GCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCC 8794
|| || || || || | |||||||| || ||||| |||||||| ||||||| |
Sbjct 1118255 GCGCTGTTCACTATATCGAACCCCACCGTGCCACCGAACGTGCTGGGCATCCAGTACTCA 1118314
Query 8795 GGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGA 8854
|||||||||||| ||| ||| |||||||| ||||| || ||||| |||| ||| |
Sbjct 1118315 GGGGAGCAGATGGGGTTTCCCAGCAGGCCTTTCAGGGAGAAGGGAGCTCCCATCTCCACC 1118374
Query 8855 ATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAAC 8914
||| |||| ||||| | || ||| | |||||| ||||||| | || | ||||| |
Sbjct 1118375 ATGGTCTCTCCGAACACAGCCCCGGGCCTGGGCTTCTCCACCAGCAGCCCAGAGTACAGC 1118434
Query 8915 TCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974
||||| ||| | ||||| || || | || || || || | ||||| ||||||
Sbjct 1118435 TCCACCAGCTCCACATCTCCATACAGCTTCTCCAGCTCCGCCGCCAGCTCCTTATCTCCT 1118494
Score = 105 bits (116), Expect = 9e-18
Identities = 169/243 (70%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681
|| || || |||||||| || | | || || ||| || ||||| || ||||
Sbjct 1120760 ATAAGCCGTGTGGTCTGGAAGATGCGCTCATCGTCCCAGTCGGGATGCTCCTCCTTCATG 1120819
Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741
| || || || | |||||||||||| |||||||| || ||||||||||| || |||||
Sbjct 1120820 ATGTCACAAACACGGTTGTGTTCCCTCAGCCAGATGGTGGCGTACATCATCAGGCCAGGG 1120879
Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801
||||| || || ||||| ||||| ||||| | || || || || | |||||
Sbjct 1120880 ACCAGACCGAAGGCCTCGTGACCCACAGCGAATCGGTGCACCTCAGGGACGTGAGGAGGG 1120939
Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861
|| ||| | |||||| || ||||| ||| || ||||||| || || || | || |
Sbjct 1120940 TAATGCATCTCCACCTGAACGTCTTTAACCAGCGGTGGATACACCTCGCCATCCACAACC 1120999
Query 9862 TGA 9864
|||
Sbjct 1121000 TGA 1121002
>seq10503
Length=4519180
Score = 91.5 bits (100), Expect = 2e-13
Identities = 175/253 (69%), Gaps = 4/253 (2%)
Strand=Plus/Minus
Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672
|| ||||| ||||||| |||||||||||||| || ||||| | ||| || || |||
Sbjct 1201665 CCTATAATAATGAGTCTGGTGGTCTGAAACAGCTGCTCGTCTCCCCAGGTGGGGTGCTCT 1201606
Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732
||||| | || || || | |||||| |||| ||||| | || || ||||| |
Sbjct 1201605 TCCTTCAGGATGTCACAGACACGGTTGTGCTCCCGCAGCCACAGGGTGGCATACATGCTT 1201546
Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCG-GGCAC 9791
||||| |||| ||| ||||| |||| || || | |||| || | || | | || ||
Sbjct 1201545 AGACCTGGCAGCAGCCCAAACACCTCCTGGCCTATGGCCATCTGC-TGTTCTGGAGGGAC 1201487
Query 9792 TTCGGGAGGATAGATCATGTGCAC-CTGGACATCTTTGACCGAGGGGGGATACATTTCAC 9850
| ||||| || |||| | ||| | ||| ||| || | |||||| ||||| || |
Sbjct 1201486 TGATGGAGGGTAACTCATATTCACGTTTGAC-TCTGCCACGGTGGGGGGGTACATCTCTC 1201428
Query 9851 CGTCAATAATCTG 9863
| | || |||||
Sbjct 1201427 CCTTTATGATCTG 1201415
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708429724828400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |