Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq183 127 2e-24 seq10555 89.7 5e-13 >seq183 Length=784777 Score = 127 bits (140), Expect = 2e-24 Identities = 157/211 (74%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| |||| || ||||| || || | ||| || ||| || ||| ||| |||| Sbjct 331877 CAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCA 331936 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 ||||||| ||| ||||||| || || ||||||||||| ||||| ||||||||||| | | Sbjct 331937 GCTGTTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGA 331996 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTT 94978 | || ||||| ||| | | ||||| || ||| || || || | |||||||| || Sbjct 331997 TCTTGGCCTTCACGTTCTCAATGGTGTC-GCTTGGCTCAACCTCGAGGGTGATGGTCTTG 332055 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| || || ||||| ||||||||||||| Sbjct 332056 CCAGTCAGGGTCTTCACGAAGATCTGCATGC 332086 Score = 113 bits (124), Expect = 4e-20 Identities = 172/242 (71%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||||| ||| || || | |||| ||||| ||| | ||| || ||||| || | ||| | Sbjct 331618 TTTACTGTCCGCCCCTGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGT 331677 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGAT----TAATCTTTGC 94888 | || || ||| ||| ||||||||||| ||| ||||||| || || ||| Sbjct 331678 AGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCAACCTCTGC 331737 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| ||||| || |||||||| | || || || ||||| | | ||||| Sbjct 331738 TGATCTGGGGGAATGCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTC- 331796 Query 94949 GCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||| || || |||| |||||||| || || || || || || || ||||||||||| Sbjct 331797 GCTTGGCTCAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTTACGAAGATCTGCAT 331856 Query 95008 GC 95009 || Sbjct 331857 GC 331858 Score = 100 bits (110), Expect = 3e-16 Identities = 118/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || | ||||| || || ||||| ||||| ||||| |||||||| Sbjct 332157 ATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTT 332216 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGA 94970 ||| | || || || ||||| | | |||||| | ||| || || |||| |||| Sbjct 332217 GTCCTGGATCTTGGCTTTGACATTCTCAATTGTGTCA-CTTGGCTCAACCTCAAGGGTGA 332275 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || ||||| || || ||||||||||| ||||| Sbjct 332276 TGGTCTTGCCAGTGAGGGTCTTCACAAAGATTTGCAT 332312 >seq10555 Length=3328687 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||| || ||| ||| |||||||| || || Sbjct 3315697 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTACCA 3315756 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| || | ||||| || |||||||| ||||| || || | || || || ||| Sbjct 3315757 GCGAAGATCAAACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTTGGCTTTG 3315816 Query 94931 ACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989 ||| | | |||||| | ||| || || || | |||||||| || ||||| || || Sbjct 3315817 ACGTTCTCAATGGTGTCA-CTTGGCTCCACTTCGAGAGTGATGGTCTTGCCAGTCAGCGT 3315875 Query 94990 TTTCACAAAGATCTGCAT 95007 ||||| ||||||||||| Sbjct 3315876 CTTCACGAAGATCTGCAT 3315893 Score = 86.0 bits (94), Expect = 6e-12 Identities = 161/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| || | |||| ||| | || || ||||| || | ||| || ||| | Sbjct 3318417 CCTCCCCTCAGACGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3318476 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| || |||||||| || || | ||||| | | ||||| || || || Sbjct 3318477 AGGGTGCGTCCGTCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGGG 3318536 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959 || || || || || | || || || |||||| ||| ||||| || ||| || || Sbjct 3318537 ATTCCCTCCTTATCTTGGATCTTGGCTTTGACGTTCTCGATGGTGTC-GCTTGGCTCCAC 3318595 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTAC 95013 || | |||||||| || ||||| || || ||||||||||||||||| |||| Sbjct 3318596 CTCCAAGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCATCTTTAC 3318649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448231044924600