Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq183 127 2e-24
seq10555 89.7 5e-13
>seq183
Length=784777
Score = 127 bits (140), Expect = 2e-24
Identities = 157/211 (74%), Gaps = 3/211 (1%)
Strand=Plus/Plus
Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859
|||| |||| || ||||| || || | ||| || ||| || ||| ||| ||||
Sbjct 331877 CAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCA 331936
Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919
||||||| ||| ||||||| || || ||||||||||| ||||| ||||||||||| | |
Sbjct 331937 GCTGTTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGA 331996
Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTT 94978
| || ||||| ||| | | ||||| || ||| || || || | |||||||| ||
Sbjct 331997 TCTTGGCCTTCACGTTCTCAATGGTGTC-GCTTGGCTCAACCTCGAGGGTGATGGTCTTG 332055
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
||||| || || ||||| |||||||||||||
Sbjct 332056 CCAGTCAGGGTCTTCACGAAGATCTGCATGC 332086
Score = 113 bits (124), Expect = 4e-20
Identities = 172/242 (71%), Gaps = 6/242 (2%)
Strand=Plus/Plus
Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832
||||| ||| || || | |||| ||||| ||| | ||| || ||||| || | ||| |
Sbjct 331618 TTTACTGTCCGCCCCTGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGT 331677
Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGAT----TAATCTTTGC 94888
| || || ||| ||| ||||||||||| ||| ||||||| || || |||
Sbjct 331678 AGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCAACCTCTGC 331737
Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948
|||||||| ||||| || |||||||| | || || || ||||| | | |||||
Sbjct 331738 TGATCTGGGGGAATGCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTC- 331796
Query 94949 GCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| ||| || || |||| |||||||| || || || || || || || |||||||||||
Sbjct 331797 GCTTGGCTCAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTTACGAAGATCTGCAT 331856
Query 95008 GC 95009
||
Sbjct 331857 GC 331858
Score = 100 bits (110), Expect = 3e-16
Identities = 118/157 (75%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| |||||||| || || | ||||| || || ||||| ||||| ||||| ||||||||
Sbjct 332157 ATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTT 332216
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGA 94970
||| | || || || ||||| | | |||||| | ||| || || |||| ||||
Sbjct 332217 GTCCTGGATCTTGGCTTTGACATTCTCAATTGTGTCA-CTTGGCTCAACCTCAAGGGTGA 332275
Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| || ||||| || || ||||||||||| |||||
Sbjct 332276 TGGTCTTGCCAGTGAGGGTCTTCACAAAGATTTGCAT 332312
>seq10555
Length=3328687
Score = 89.7 bits (98), Expect = 5e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870
|| || ||||| || | ||| || ||| || ||| ||| |||||||| || ||
Sbjct 3315697 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTACCA 3315756
Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930
| ||||| || | ||||| || |||||||| ||||| || || | || || || |||
Sbjct 3315757 GCGAAGATCAAACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTTGGCTTTG 3315816
Query 94931 ACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989
||| | | |||||| | ||| || || || | |||||||| || ||||| || ||
Sbjct 3315817 ACGTTCTCAATGGTGTCA-CTTGGCTCCACTTCGAGAGTGATGGTCTTGCCAGTCAGCGT 3315875
Query 94990 TTTCACAAAGATCTGCAT 95007
||||| |||||||||||
Sbjct 3315876 CTTCACGAAGATCTGCAT 3315893
Score = 86.0 bits (94), Expect = 6e-12
Identities = 161/234 (69%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
||||| |||| || | |||| ||| | || || ||||| || | ||| || ||| |
Sbjct 3318417 CCTCCCCTCAGACGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3318476
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| || |||||||| || || | ||||| | | ||||| || || ||
Sbjct 3318477 AGGGTGCGTCCGTCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGGG 3318536
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959
|| || || || || | || || || |||||| ||| ||||| || ||| || ||
Sbjct 3318537 ATTCCCTCCTTATCTTGGATCTTGGCTTTGACGTTCTCGATGGTGTC-GCTTGGCTCCAC 3318595
Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTAC 95013
|| | |||||||| || ||||| || || ||||||||||||||||| ||||
Sbjct 3318596 CTCCAAGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCATCTTTAC 3318649
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448231044924600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |