Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq10589 181 2e-41 seq466 156 7e-34 seq10560 113 7e-21 >seq10589 Length=2539276 Score = 181 bits (200), Expect = 2e-41 Identities = 201/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| | |||||| ||||||||||| || ||||||||||| ||||| Sbjct 1195634 CGCCAAGCGTCACCGCAAAGTTCTTCGCGATAACATCCAGGGCATCACCAAGCCCGCTAT 1195693 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| |||||||||| ||||||||| |||| || || |||| || |||| Sbjct 1195694 CCGCCGACTGGCGTGTCGTGGTGGCGTCAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 1195753 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| ||| || || || ||| ||||| Sbjct 1195754 CCGCGGTGTGTTGAAAGTGTTCCTGGAGAACGTGATCAGAGACGCCGTCACCTACACCGA 1195813 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| | |||||| | || || || ||||||| || || Sbjct 1195814 GCACGCCAAGAGAAAGACCGTCACCGCTATGGATGTGGTGTACGCCCTGAAACGCCAGGG 1195873 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || || || ||| ||||| Sbjct 1195874 ACGCACTCTGTACGGATTCGGAGGTTAA 1195901 >seq466 Length=309202 Score = 156 bits (172), Expect = 7e-34 Identities = 191/261 (73%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | | || || ||||||||||| || ||||||||||| || || Sbjct 48268 CGCTAAGCGGCACCGGAAAGTGCTCCGCGATAACATCCAGGGTATCACCAAGCCGGCCAT 48327 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || || ||||||||| |||| || || |||| || |||| Sbjct 48328 CCGCCGTCTGGCTCGCCGCGGCGGCGTCAAGCGTATCTCCGGGCTGATCTACGAGGAGAC 48387 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | || || ||| ||| |||| || || || ||| ||||| Sbjct 48388 CCGCGGCGTGCTGAAGGTGTTTCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 48447 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| | |||||| | || || || |||| || || || Sbjct 48448 GCACGCCAAGAGAAAGACCGTCACCGCTATGGATGTGGTGTACGCCCTGAAGCGCCAGGG 48507 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || || || || Sbjct 48508 CCGCACGCTGTACGGCTTCGG 48528 >seq10560 Length=3151738 Score = 113 bits (124), Expect = 7e-21 Identities = 187/269 (70%), Gaps = 1/269 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| | ||| |||| || | | |||| |||||||| | ||||| || ||||| ||||| Sbjct 2324285 CGCCAGGCGCCATCACAAAGTTATTCGCGATAACATTTATGGAATTACAAAGCCCGCTAT 2324226 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || | || |||||| ||||||| |||||| | || ||||||| |||| Sbjct 2324225 CCGTCGTCTTGCGCATCTTGGTGGCGTCAAGCATGTCTCCAGTCTGATCTATGAGGAGAC 2324166 Query 16552 TCGTGATGTTTTGAAGA-TCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || ||| | || | | || || ||| ||| | | || || || || || | Sbjct 2324165 CCGCAGTGTGCTAAAAAGTGTTACTGGAGAACGTGACCAGGGACGCCGTCACTTACACGG 2324106 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||| || || | ||| | |||||| | |||||| | || || || ||||||| || | Sbjct 2324105 AGCATGCCAAGAGAAAGGCCGTCACCGCTATGGATGTGGTGTACGCCCTGAAACGCCAGG 2324046 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | || | | || || |||||| | ||| Sbjct 2324045 GACGCACTCTGTACGGCTTTGGAGGCTAA 2324017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79065384914355