Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq10589 181 2e-41
seq466 156 7e-34
seq10560 113 7e-21
>seq10589
Length=2539276
Score = 181 bits (200), Expect = 2e-41
Identities = 201/268 (75%), Gaps = 0/268 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| |||||||| |||| | |||||| ||||||||||| || ||||||||||| |||||
Sbjct 1195634 CGCCAAGCGTCACCGCAAAGTTCTTCGCGATAACATCCAGGGCATCACCAAGCCCGCTAT 1195693
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| |||||||||| ||||||||| |||| || || |||| || ||||
Sbjct 1195694 CCGCCGACTGGCGTGTCGTGGTGGCGTCAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 1195753
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| ||||| | ||||| ||| ||| ||| || || || ||| |||||
Sbjct 1195754 CCGCGGTGTGTTGAAAGTGTTCCTGGAGAACGTGATCAGAGACGCCGTCACCTACACCGA 1195813
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| |||||| | |||||| | || || || ||||||| || ||
Sbjct 1195814 GCACGCCAAGAGAAAGACCGTCACCGCTATGGATGTGGTGTACGCCCTGAAACGCCAGGG 1195873
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|| | | || || || ||| |||||
Sbjct 1195874 ACGCACTCTGTACGGATTCGGAGGTTAA 1195901
>seq466
Length=309202
Score = 156 bits (172), Expect = 7e-34
Identities = 191/261 (73%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||| || || | | || || ||||||||||| || ||||||||||| || ||
Sbjct 48268 CGCTAAGCGGCACCGGAAAGTGCTCCGCGATAACATCCAGGGTATCACCAAGCCGGCCAT 48327
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| ||||||||||| || || || ||||||||| |||| || || |||| || ||||
Sbjct 48328 CCGCCGTCTGGCTCGCCGCGGCGGCGTCAAGCGTATCTCCGGGCTGATCTACGAGGAGAC 48387
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || ||||| | || || ||| ||| |||| || || || ||| |||||
Sbjct 48388 CCGCGGCGTGCTGAAGGTGTTTCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 48447
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| |||||| | |||||| | || || || |||| || || ||
Sbjct 48448 GCACGCCAAGAGAAAGACCGTCACCGCTATGGATGTGGTGTACGCCCTGAAGCGCCAGGG 48507
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||| | | | || || || ||
Sbjct 48508 CCGCACGCTGTACGGCTTCGG 48528
>seq10560
Length=3151738
Score = 113 bits (124), Expect = 7e-21
Identities = 187/269 (70%), Gaps = 1/269 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| | ||| |||| || | | |||| |||||||| | ||||| || ||||| |||||
Sbjct 2324285 CGCCAGGCGCCATCACAAAGTTATTCGCGATAACATTTATGGAATTACAAAGCCCGCTAT 2324226
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||||||| || | || |||||| ||||||| |||||| | || ||||||| ||||
Sbjct 2324225 CCGTCGTCTTGCGCATCTTGGTGGCGTCAAGCATGTCTCCAGTCTGATCTATGAGGAGAC 2324166
Query 16552 TCGTGATGTTTTGAAGA-TCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| ||| | || | | || || ||| ||| | | || || || || || |
Sbjct 2324165 CCGCAGTGTGCTAAAAAGTGTTACTGGAGAACGTGACCAGGGACGCCGTCACTTACACGG 2324106
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
|||| || || | ||| | |||||| | |||||| | || || || ||||||| || |
Sbjct 2324105 AGCATGCCAAGAGAAAGGCCGTCACCGCTATGGATGTGGTGTACGCCCTGAAACGCCAGG 2324046
Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| || | | || || |||||| | |||
Sbjct 2324045 GACGCACTCTGTACGGCTTTGGAGGCTAA 2324017
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79065384914355
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |