Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq183 98.7 1e-15 seq10555 82.4 7e-11 >seq183 Length=784777 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | ||||| || | |||||| |||| | || ||| | Sbjct 332084 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCAAGC 332025 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | || || ||||| ||||||||||| || || || ||||| Sbjct 332024 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGATCAG 331965 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | | ||||||||| || ||||||| | | | | |||||| ||| Sbjct 331964 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 331905 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||||||| || | ||||| ||||| | || || ||||| Sbjct 331904 ATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTCAGGGGAGG 331858 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26767 AAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAA 26826 |||||||| | ||||| || || | ||||| || | |||||| | || | || ||| Sbjct 332314 AAATGCAAATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAA 332255 Query 26827 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886 ||||| || ||| | |||||| ||||| ||||||||||| || || || || | Sbjct 332254 GTGACACAATTGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACC 332195 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATA 26946 | || || | || | || ||||| || || ||||||| | | | | |||||| | Sbjct 332194 AGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCTTGTCCGACTACA 332135 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | || || ||||| || ||| ||||||| ||||| | || || ||||| Sbjct 332134 ATATCCAGAAAGAGTCCACTCTCCATCTTGTCCTTCGTCTCAGGGGAGG 332086 >seq10555 Length=3328687 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | ||||| || || | ||||| || | |||||| | || | || || Sbjct 3318646 AAGATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATCACCTTGGAGGTGGAGCCA 3318587 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 | ||||||||||||| | |||||| ||||| || || || || || || ||||| Sbjct 3318586 AGCGACACCATCGAGAACGTCAAAGCCAAGATCCAAGATAAGGAGGGAATCCCACCCGAC 3318527 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | || || | || || || || || ||||| | | | | | |||||| Sbjct 3318526 CAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAAGACGGACGCACCCTGTCCGACTAC 3318467 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || || || || |||| |||||||| | || || ||||| Sbjct 3318466 AACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTTCGTCTGAGGGGAGG 3318417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478598169489200