Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq10555 114 1e-20 seq183 104 2e-17 seq10607 89.7 5e-13 >seq10555 Length=3328687 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | |||||| || | ||| | ||| |||||||| || |||||||| ||| Sbjct 3315210 GCCGCCACGGAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 3315269 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || |||||||| || || |||| | |||||||||||| || || Sbjct 3315270 CAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGG 3315329 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||| || || || |||||| ||| | | || | || || | | ||| | Sbjct 3315330 GATTCCCTCCTTATCCTGGATTTTAGCCTTCACATTTTCAATGGTGTCACTTGGCTCCAC 3315389 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| ||||| || || || || ||||| |||||||| Sbjct 3315390 TTCGAGAGTGATGGTCTTACCAGTCAGCGTCTTCACGAAGATCTGCAT 3315437 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || ||| || || | ||| | ||| |||||||| || |||||||| ||| | Sbjct 3315667 CCTCCCCTCAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3315726 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || |||||||| || ||| |||| |||||||||||||| ||||| Sbjct 3315727 AGGGTGCGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCGGGAGGA 3315786 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || |||| | ||| | || || | | ||| | Sbjct 3315787 ATGCCTTCCTTATCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGCTCCACT 3315846 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || || || ||||| |||||||| Sbjct 3315847 TCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 3315893 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || ||| || || | || | ||| |||||||| || |||||||| ||| | Sbjct 3318417 CCTCCCCTCAGACGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3318476 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||| || |||||||| || ||| |||| | |||||||||||| || ||| Sbjct 3318477 AGGGTGCGTCCGTCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGGG 3318536 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || || || ||| || |||| | ||| | || ||| | | ||| | Sbjct 3318537 ATTCCCTCCTTATCTTGGATCTTGGCTTTGACGTTCTCGATGGTGTCGCTTGGCTCCACC 3318596 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| ||||| || || || || || || |||||||| Sbjct 3318597 TCCAAGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 3318643 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131043 CTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102 |||||| || |||||||| ||| | || || || || |||||||| || || | Sbjct 3315474 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCATCTTCAAGCTGCTTACCGGCAAA 3315533 Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 ||| | |||||||||||| || |||||||| || || || ||| || |||| | Sbjct 3315534 GATCAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTATCTTGGATCTTGGCTTTGACGTT 3315593 Query 131163 CTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 ||| | ||| ||| ||| || | || | ||| | ||| ||||| || || || || || Sbjct 3315594 CTCAATAGTGTCGCTGGGTTCCACCTCCAAGGTGATGGTCTTACCAGTGAGGGTCTTGAC 3315653 Query 131223 GAAAATCTGCAT 131234 || |||||||| Sbjct 3315654 AAAGATCTGCAT 3315665 >seq183 Length=784777 Score = 104 bits (114), Expect = 2e-17 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || | ||| | ||| || || || || |||||||| ||| || ||||||| Sbjct 331869 ACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCC 331928 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 || || ||||| ||||| || |||| || | |||||| || || || || |||||||| Sbjct 331929 ATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTT 331988 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| ||| || ||| | | ||| | || ||| | | ||| | |||| ||| | Sbjct 331989 GTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGAT 332048 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 ||| || || || || || || ||||| ||||||||| || Sbjct 332049 GGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGCCT 332088 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || | ||| | || ||||| || || || ||||| ||| || |||||| Sbjct 332097 ACGAAGGACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAGTCGGACAAGGTGCGTCC 332156 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 || || ||||||||||| ||| |||| || | ||||||||| || || || |||||||| Sbjct 332157 ATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTT 332216 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| ||| || |||| | ||| | || || | | ||| | || | ||| | Sbjct 332217 GTCCTGGATCTTGGCTTTGACATTCTCAATTGTGTCACTTGGCTCAACCTCAAGGGTGAT 332276 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || || || || || || || || || ||||| Sbjct 332277 GGTCTTGCCAGTGAGGGTCTTCACAAAGATTTGCAT 332312 >seq10607 Length=2140885 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 145676 ACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTC 145735 || ||||| | ||||||||||| ||||| ||||| || || || ||||| || || ||| Sbjct 830792 ACAATCTCTGTACACAAATTGCTGCATTTAATGGTGCCGAGGTTCTGCTGGTTGCTCTTC 830851 Query 145736 CTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTC 145779 || ||||| || || ||||| |||||||| || ||||||||| Sbjct 830852 CTATTGCAGGCATCTTTGTAAAGCATGTAGGGAGTGCCAGTCTC 830895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471949461782400