Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq10555 114 1e-20
seq183 104 2e-17
seq10607 89.7 5e-13
>seq10555
Length=3328687
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
||| || || | |||||| || | ||| | ||| |||||||| || |||||||| |||
Sbjct 3315210 GCCGCCACGGAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 3315269
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| |||||| || || |||||||| || || |||| | |||||||||||| || ||
Sbjct 3315270 CAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGG 3315329
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|||||| || || || |||||| ||| | | || | || || | | ||| |
Sbjct 3315330 GATTCCCTCCTTATCCTGGATTTTAGCCTTCACATTTTCAATGGTGTCACTTGGCTCCAC 3315389
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| || | ||| ||||| || || || || ||||| ||||||||
Sbjct 3315390 TTCGAGAGTGATGGTCTTACCAGTCAGCGTCTTCACGAAGATCTGCAT 3315437
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| || | || ||| || || | ||| | ||| |||||||| || |||||||| ||| |
Sbjct 3315667 CCTCCCCTCAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3315726
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| || || |||||||| || ||| |||| |||||||||||||| |||||
Sbjct 3315727 AGGGTGCGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCGGGAGGA 3315786
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||| || || ||| || |||| | ||| | || || | | ||| |
Sbjct 3315787 ATGCCTTCCTTATCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGCTCCACT 3315846
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| || | ||| || || || || || || ||||| ||||||||
Sbjct 3315847 TCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 3315893
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| || | || ||| || || | || | ||| |||||||| || |||||||| ||| |
Sbjct 3318417 CCTCCCCTCAGACGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3318476
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||| || |||||||| || ||| |||| | |||||||||||| || |||
Sbjct 3318477 AGGGTGCGTCCGTCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGGG 3318536
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
||||| || || || ||| || |||| | ||| | || ||| | | ||| |
Sbjct 3318537 ATTCCCTCCTTATCTTGGATCTTGGCTTTGACGTTCTCGATGGTGTCGCTTGGCTCCACC 3318596
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | ||| ||||| || || || || || || ||||||||
Sbjct 3318597 TCCAAGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 3318643
Score = 86.0 bits (94), Expect = 6e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 131043 CTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102
|||||| || |||||||| ||| | || || || || |||||||| || || |
Sbjct 3315474 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCATCTTCAAGCTGCTTACCGGCAAA 3315533
Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162
||| | |||||||||||| || |||||||| || || || ||| || |||| |
Sbjct 3315534 GATCAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTATCTTGGATCTTGGCTTTGACGTT 3315593
Query 131163 CTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222
||| | ||| ||| ||| || | || | ||| | ||| ||||| || || || || ||
Sbjct 3315594 CTCAATAGTGTCGCTGGGTTCCACCTCCAAGGTGATGGTCTTACCAGTGAGGGTCTTGAC 3315653
Query 131223 GAAAATCTGCAT 131234
|| ||||||||
Sbjct 3315654 AAAGATCTGCAT 3315665
>seq183
Length=784777
Score = 104 bits (114), Expect = 2e-17
Identities = 155/220 (70%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078
||| || || | ||| | ||| || || || || |||||||| ||| || |||||||
Sbjct 331869 ACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCC 331928
Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138
|| || ||||| ||||| || |||| || | |||||| || || || || ||||||||
Sbjct 331929 ATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTT 331988
Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198
||| ||| || ||| | | ||| | || ||| | | ||| | |||| ||| |
Sbjct 331989 GTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGAT 332048
Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238
||| || || || || || || ||||| ||||||||| ||
Sbjct 332049 GGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGCCT 332088
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078
||| || || | ||| | || ||||| || || || ||||| ||| || ||||||
Sbjct 332097 ACGAAGGACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAGTCGGACAAGGTGCGTCC 332156
Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138
|| || ||||||||||| ||| |||| || | ||||||||| || || || ||||||||
Sbjct 332157 ATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTT 332216
Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198
||| ||| || |||| | ||| | || || | | ||| | || | ||| |
Sbjct 332217 GTCCTGGATCTTGGCTTTGACATTCTCAATTGTGTCACTTGGCTCAACCTCAAGGGTGAT 332276
Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
||| || || || || || || || || || |||||
Sbjct 332277 GGTCTTGCCAGTGAGGGTCTTCACAAAGATTTGCAT 332312
>seq10607
Length=2140885
Score = 89.7 bits (98), Expect = 5e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 145676 ACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTC 145735
|| ||||| | ||||||||||| ||||| ||||| || || || ||||| || || |||
Sbjct 830792 ACAATCTCTGTACACAAATTGCTGCATTTAATGGTGCCGAGGTTCTGCTGGTTGCTCTTC 830851
Query 145736 CTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTC 145779
|| ||||| || || ||||| |||||||| || |||||||||
Sbjct 830852 CTATTGCAGGCATCTTTGTAAAGCATGTAGGGAGTGCCAGTCTC 830895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471949461782400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |