Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq10555 98.7 8e-16
seq183 87.8 1e-12
>seq10555
Length=3328687
Score = 98.7 bits (108), Expect = 8e-16
Identities = 153/217 (71%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || ||||||||||| || ||||||||||||| || ||| ||||
Sbjct 3318432 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCT 3318491
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| || || || || | || || ||||| ||||| || | ||||| || ||
Sbjct 3318492 TCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCT 3318551
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || ||| || || | | | ||||||| |||||| |||| ||||||||
Sbjct 3318552 TGGATCTTGGCT--TTGACGTTCTCGATGGTGTCGCTTGGCTCCACCTCCAAGGTGATGG 3318609
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938
| || || |||||||| || ||||| |||||||| ||
Sbjct 3318610 TCTTACCAGTCAGCGTCTTCACAAAGATCTGCATCTT 3318646
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/231 (69%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || | ||| || | ||| || ||||||||||| || ||||||||||||| |
Sbjct 3315211 CCGCCACGGAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3315270
Query 16769 ATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824
| ||| |||||| |||| || || || ||| | || || ||||| |||||
Sbjct 3315271 AGGGT----GCGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCGGG 3315326
Query 16825 AGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC 16884
|| | ||||| || || |||| |||||| | | | ||||| | |||||
Sbjct 3315327 TGGGATTCCCTCCTTATCCTGGATTTTAGCCTTCACATTTTCAATGGTGTCACTTGGCTC 3315386
Query 16885 CGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| ||| | |||||||| || || |||||||| || || || ||||||||
Sbjct 3315387 CACTTCGAGAGTGATGGTCTTACCAGTCAGCGTCTTCACGAAGATCTGCAT 3315437
>seq183
Length=784777
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| || | |||||| ||||| || || || ||||||||||||| || ||| | ||
Sbjct 331873 AGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 331932
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| |||||||| ||| | || | || ||| || || || | ||| ||||||||
Sbjct 331933 TCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCC 331992
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || || |||||| | | | ||||||| ||||| || | ||||||||
Sbjct 331993 TGGATCTTGGC--CTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGG 332050
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| || || ||||| || || || || ||||||||
Sbjct 332051 TCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 332084
Score = 84.2 bits (92), Expect = 2e-11
Identities = 166/243 (68%), Gaps = 11/243 (5%)
Strand=Plus/Plus
Query 16702 CATTTAC---CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTT 16758
||||||| || || | || | ||| |||| || || ||||||||||| || |||||
Sbjct 331616 CATTTACTGTCCGCCCCTGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTT 331675
Query 16759 GTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGC----ATAAATAAGCCGCT 16814
|||||| | || ||| | || |||| |||||||| || || || | || ||
Sbjct 331676 GTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCAACCTCT 331735
Query 16815 GTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGT 16872
| || || || | |||||||||||| || || ||| || || | | | ||
Sbjct 331736 GCTGATCTGGGGGAATGCCCTCTTTGTCTTGGATCTTGGCT--TTGACATTCTCAATGGT 331793
Query 16873 GTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTG 16932
||||| ||||| || | ||||||||| || |||||||| || || || || |||||
Sbjct 331794 GTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTTACGAAGATCTG 331853
Query 16933 CAT 16935
|||
Sbjct 331854 CAT 331856
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405035001197650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |