Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq10555 98.7 8e-16 seq183 87.8 1e-12 >seq10555 Length=3328687 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||||||||||| || ||| |||| Sbjct 3318432 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCT 3318491 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || || || || | || || ||||| ||||| || | ||||| || || Sbjct 3318492 TCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCT 3318551 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| || || | | | ||||||| |||||| |||| |||||||| Sbjct 3318552 TGGATCTTGGCT--TTGACGTTCTCGATGGTGTCGCTTGGCTCCACCTCCAAGGTGATGG 3318609 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || || |||||||| || ||||| |||||||| || Sbjct 3318610 TCTTACCAGTCAGCGTCTTCACAAAGATCTGCATCTT 3318646 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||| || ||||||||||| || ||||||||||||| | Sbjct 3315211 CCGCCACGGAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3315270 Query 16769 ATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824 | ||| |||||| |||| || || || ||| | || || ||||| ||||| Sbjct 3315271 AGGGT----GCGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCGGG 3315326 Query 16825 AGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC 16884 || | ||||| || || |||| |||||| | | | ||||| | ||||| Sbjct 3315327 TGGGATTCCCTCCTTATCCTGGATTTTAGCCTTCACATTTTCAATGGTGTCACTTGGCTC 3315386 Query 16885 CGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||| | |||||||| || || |||||||| || || || |||||||| Sbjct 3315387 CACTTCGAGAGTGATGGTCTTACCAGTCAGCGTCTTCACGAAGATCTGCAT 3315437 >seq183 Length=784777 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | |||||| ||||| || || || ||||||||||||| || ||| | || Sbjct 331873 AGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 331932 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| |||||||| ||| | || | || ||| || || || | ||| |||||||| Sbjct 331933 TCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCC 331992 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||||| ||||| || | |||||||| Sbjct 331993 TGGATCTTGGC--CTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGG 332050 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || || || || |||||||| Sbjct 332051 TCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 332084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 166/243 (68%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 16702 CATTTAC---CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTT 16758 ||||||| || || | || | ||| |||| || || ||||||||||| || ||||| Sbjct 331616 CATTTACTGTCCGCCCCTGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTT 331675 Query 16759 GTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGC----ATAAATAAGCCGCT 16814 |||||| | || ||| | || |||| |||||||| || || || | || || Sbjct 331676 GTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCAACCTCT 331735 Query 16815 GTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGT 16872 | || || || | |||||||||||| || || ||| || || | | | || Sbjct 331736 GCTGATCTGGGGGAATGCCCTCTTTGTCTTGGATCTTGGCT--TTGACATTCTCAATGGT 331793 Query 16873 GTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTG 16932 ||||| ||||| || | ||||||||| || |||||||| || || || || ||||| Sbjct 331794 GTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTTACGAAGATCTG 331853 Query 16933 CAT 16935 ||| Sbjct 331854 CAT 331856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405035001197650