Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1242 95.1 8e-15 seq10644 91.5 1e-13 >seq1242 Length=5268141 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| ||||||||||||||||||||||| | |||||||||||| |||||||||||| Sbjct 5005666 CTCTCTTTTCAAAGTTCTTTTCAACTTTCCTTTTCGGTACTTGTTCACTATCGGTCTCGT 5005607 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 5005606 GCCGGTATTTAGCCTTA 5005590 >seq10644 Length=1840839 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 6348 GGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAAC 6407 || || ||||| ||||||||| ||| || || |||| ||| || || || || || | Sbjct 236894 GGAGCCCAGACTCAGTTTGATGCCAAGAATGACCGCTACATTGTCAATGGCTCTCACGAG 236953 Query 6408 TCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAA 6467 | ||| ||||| ||| | || || || ||||||||||||||||||||||||| || Sbjct 236954 GCAAACAAACTGCAAGACATGCTGGATGGTTTTATTCGCAAGTTTGTGCTGTGTCCTGAG 237013 Query 6468 TGCGATAACCCGGAGACCGA 6487 || ||||| || || || || Sbjct 237014 TGTGATAATCCAGAAACTGA 237033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334903377915785