Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq1242 95.1 8e-15
seq10644 91.5 1e-13
>seq1242
Length=5268141
Score = 95.1 bits (104), Expect = 8e-15
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| ||||||||||||||||||||||| | |||||||||||| ||||||||||||
Sbjct 5005666 CTCTCTTTTCAAAGTTCTTTTCAACTTTCCTTTTCGGTACTTGTTCACTATCGGTCTCGT 5005607
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 5005606 GCCGGTATTTAGCCTTA 5005590
>seq10644
Length=1840839
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 6348 GGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAAC 6407
|| || ||||| ||||||||| ||| || || |||| ||| || || || || || |
Sbjct 236894 GGAGCCCAGACTCAGTTTGATGCCAAGAATGACCGCTACATTGTCAATGGCTCTCACGAG 236953
Query 6408 TCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAA 6467
| ||| ||||| ||| | || || || ||||||||||||||||||||||||| ||
Sbjct 236954 GCAAACAAACTGCAAGACATGCTGGATGGTTTTATTCGCAAGTTTGTGCTGTGTCCTGAG 237013
Query 6468 TGCGATAACCCGGAGACCGA 6487
|| ||||| || || || ||
Sbjct 237014 TGTGATAATCCAGAAACTGA 237033
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334903377915785
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |