Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq183 122 8e-23 seq10555 104 2e-17 >seq183 Length=784777 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| |||| || ||| | Sbjct 332084 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCAAGC 332025 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||||||||| ||||| || || || Sbjct 332024 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGATCAG 331965 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||||||||| | ||||||| ||||| || ||| ||||| Sbjct 331964 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 331905 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||||||||| || ||| | || || | || || ||||| Sbjct 331904 ATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTCAGGGGAGG 331858 Score = 111 bits (122), Expect = 1e-19 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| | || || || ||||||| | || || ||| | Sbjct 332313 AATGCAAATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAG 332254 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| || ||| | || |||| || | || ||||||||||| ||||| || || Sbjct 332253 TGACACAATTGAG--AATGTCAAAGCCAAGATCCAG-GACAAAGAAGGCATTCCCCCAGA 332197 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || || || ||||| || | ||||||| ||||| || ||| || Sbjct 332196 CCAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCTTGTCCGACTA 332137 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || ||||| ||||| || ||| | || || | || || ||||| Sbjct 332136 CAATATCCAGAAAGAGTCCACTCTCCATCTTGTCCTTCGTCTCAGGGGAGG 332086 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/235 (69%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || |||||||| ||||||| || ||||||| | || || ||| | Sbjct 331856 ATGCAGATCTTCGTAAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 331797 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || |||| || | || |||||||| || ||||| || || Sbjct 331796 GACACCATTGAG--AATGTCAAAGCCAAGATCCAA-GACAAAGAGGGCATTCCCCCAGAT 331740 Query 25116 CAACAGCGGATTATT----TTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 || ||| || | || |||||||||||||| | ||||||| ||||| || || Sbjct 331739 CAGCAGAGGTTGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGA 331680 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 ||||| || || || || ||||| || || | ||||| | || || || ||| Sbjct 331679 CTACAACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGTCTCAGGGGCGGA 331625 >seq10555 Length=3328687 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| ||||| ||||||| ||||||||||| | | Sbjct 3315437 ATGCAGATCTTCGTGAAGACGCTGACTGGTAAGACCATCACTCTCGAAGTGGAGCCAAGT 3315378 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| |||||| || || || || || ||||| ||||| Sbjct 3315377 GACACCATTGAAAATGTGAAGGCTAAAATCCAGGATAAGGAGGGAATCCCACCCGACCAG 3315318 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || || | ||||||| ||||| || ||| ||||| Sbjct 3315317 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 3315258 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || ||| | || || Sbjct 3315257 ATCCAGAAGGAGTCCACCCTCCATCTCGTCCT 3315226 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| ||||||||||| | | Sbjct 3315893 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTCGAAGTGGAGCCAAGT 3315834 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| |||| || ||| || || ||||| ||||| || || Sbjct 3315833 GACACCATTGAGAACGTCA---AAGC-CAAGATCCAGGATAAGGAAGGCATTCCTCCCGA 3315778 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || || || || || || | ||||||| ||||| || ||| || Sbjct 3315777 CCAGCAGCGTTTGATCTTCGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTA 3315718 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || || || || ||||| || ||| | || || | || || ||||| Sbjct 3315717 CAACATCCAGAAGGAGTCCACCCTCCATCTCGTCCTCCGTCTGAGGGGAGG 3315667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433271306479025