Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq10555 111 1e-19
seq183 100 2e-16
seq306 82.4 6e-11
>seq10555
Length=3328687
Score = 111 bits (122), Expect = 1e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272
||||||||||| || ||||| || || | || ||||| || |||| | || |||||
Sbjct 3318649 GTAAAGATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATCACCTTGGAGGTGGAG 3318590
Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332
| | ||| ||| | || | ||||| || || ||||| |||||||| || ||||||
Sbjct 3318589 CCAAGCGACACCATCGAGAACGTCAAAGCCAAGATCCAAGATAAGGAGGGAATCCCACCC 3318530
Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392
|| || || ||||| || || || || || ||| | || || |||||| | |||||
Sbjct 3318529 GACCAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAAGACGGACGCACCCTGTCCGAC 3318470
Query 22393 TACAACATTCAAAAAGAATCCACC 22416
|||||||| || || || ||||||
Sbjct 3318469 TACAACATCCAGAAGGAGTCCACC 3318446
>seq183
Length=784777
Score = 100 bits (110), Expect = 2e-16
Identities = 144/201 (72%), Gaps = 4/201 (2%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | ||||| || || |||| ||||| || || | | |
Sbjct 331856 ATGCAGATCTTCGTAAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 331797
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || || ||||| || || |||||||| ||||| ||||| || |||||
Sbjct 331796 GACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATTCCCCCAGATCAG 331737
Query 22339 CA-ACGTC---TTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394
|| | || | || ||||||||||||||| | || ||| |||||| | || || ||
Sbjct 331736 CAGAGGTTGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTA 331677
Query 22395 CAACATTCAAAAAGAATCCAC 22415
|||||| || || || |||||
Sbjct 331676 CAACATCCAGAAGGAGTCCAC 331656
Score = 93.3 bits (102), Expect = 4e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || || || || |||| || || || || | | |
Sbjct 332084 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCAAGC 332025
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | | || || || || ||||| || || ||||| || |||||
Sbjct 332024 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGATCAG 331965
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | || ||||||||||||||| | || ||| |||||| | ||||| ||||||
Sbjct 331964 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 331905
Query 22399 ATTCAAAAAGAATCCACCATACAT 22422
|| || |||||||||||| | |||
Sbjct 331904 ATCCAGAAAGAATCCACCCTGCAT 331881
>seq306
Length=458256
Score = 82.4 bits (90), Expect = 6e-11
Identities = 71/88 (81%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380
|| ||||| ||||| || || ||||| || || || ||||||||||| |||||| ||||
Sbjct 295459 GGCATTCCCCCCGACCAGCAGCGTCTGATTTTCGCTGGCAAACAGTTGGAGGATGGCCGC 295518
Query 22381 ACCGTCTCCGATTACAACATTCAAAAAG 22408
|| | || |||||||||||||| ||||
Sbjct 295519 ACTCTGTCAGATTACAACATTCAGAAAG 295546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419673085805275
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |