Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq10555 167 4e-36 seq183 156 8e-33 >seq10555 Length=3328687 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || || | |||| ||| || |||||||| || |||||||| || ||||| Sbjct 3318417 CCTCCCCTCAGACGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3318476 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || ||||| || || | || ||||||||||| Sbjct 3318477 AGGGTGCGTCCGTCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGGG 3318536 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| ||||| ||||| || |||||| |||||||||||| || || || Sbjct 3318537 ATTCCCTCCTTATCTTGGATCTTGGCTTTGACGTTCTCGATGGTGTCGCTTGGCTCCACC 3318596 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || || || || ||||| || || |||||||| Sbjct 3318597 TCCAAGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 3318643 Score = 161 bits (178), Expect = 2e-34 Identities = 153/193 (79%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 68270 CTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAA 68329 ||| || |||||||| || |||||||| || | |||||||| | |||||| ||||| || Sbjct 3315474 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCATCTTCAAGCTGCTTACCGGCAAA 3315533 Query 68330 TATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGC 68389 || || | || ||||| ||||| || || ||||| ||||| ||||| || |||||| Sbjct 3315534 GATCAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTATCTTGGATCTTGGCTTTGACGTT 3315593 Query 68390 CTCGATGGTGTCTGCTGA-TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGA 68448 ||| || ||||| |||| ||| || |||||||||||||| || || ||||||||||||| Sbjct 3315594 CTCAATAGTGTC-GCTGGGTTCCACCTCCAAGGTGATGGTCTTACCAGTGAGGGTCTTGA 3315652 Query 68449 CGAATATCTGCAT 68461 | || |||||||| Sbjct 3315653 CAAAGATCTGCAT 3315665 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || |||||||| || |||||||| || ||||| || || | |||||||| | |||| Sbjct 3315691 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGC 3315750 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| || | | || |||||||| |||||||||||||| || || ||||| Sbjct 3315751 TTACCAGCGAAGATCAAACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTTG 3315810 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 || |||||| ||| |||||||| || || ||||| | |||||||| || || || Sbjct 3315811 GCTTTGACGTTCTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTCTTGCCAGTC 3315870 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 || ||||| ||||| |||||||| Sbjct 3315871 AGCGTCTTCACGAAGATCTGCAT 3315893 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68232 TTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG 68291 || || || || || |||| || | || || |||||||| || |||||||| || ||| Sbjct 3315208 TTGCCGCCACGGAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 3315267 Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351 || || || | |||||||| | |||||| || || || || || | || ||||||||| Sbjct 3315268 GACAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCGGGT 3315327 Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411 || || || ||||| || || || || ||||| || || |||||||| || || Sbjct 3315328 GGGATTCCCTCCTTATCCTGGATTTTAGCCTTCACATTTTCAATGGTGTCACTTGGCTCC 3315387 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| | |||||||| || || || || ||||| ||||| |||||||| Sbjct 3315388 ACTTCGAGAGTGATGGTCTTACCAGTCAGCGTCTTCACGAAGATCTGCAT 3315437 Score = 89.7 bits (98), Expect = 9e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 || ||||| || |||||||||||||| ||||| || || ||||| || || |||||| Sbjct 3318294 TGCTGGTCAGGGGGAATGCCTTCCTTATCTTGGATTTTAGCCTTCACATTTTCAATGGTG 3318353 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 || || || ||||| | |||||||| || || || || ||||| ||||| |||||| Sbjct 3318354 TCGCTTGGCTCCACTTCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGC 3318413 Query 68460 AT 68461 || Sbjct 3318414 AT 3318415 >seq183 Length=784777 Score = 156 bits (172), Expect = 8e-33 Identities = 160/208 (77%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||| ||||| |||||||| || ||||| || || | ||||||||| | Sbjct 331877 CAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCA 331936 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||| || ||||| || || | || || || || || ||||||||||| ||||| || | Sbjct 331937 GCTGTTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGA 331996 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| ||||| ||| ||| |||||||| || || || || | ||||||||| || | Sbjct 331997 TCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGGTCTTGC 332056 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || |||||||| ||||| |||||||| Sbjct 332057 CAGTCAGGGTCTTCACGAAGATCTGCAT 332084 Score = 143 bits (158), Expect = 5e-29 Identities = 158/209 (76%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||||||||| ||||| || || ||||| | || | |||||||| | Sbjct 332105 CAAGATGGAGAGTGGACTCTTTCTGGATATTGTAGTCGGACAAGGTGCGTCCATCTTCCA 332164 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || ||||| || | || || ||||| || ||||||||||| ||||| || | Sbjct 332165 GCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGA 332224 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| || ||||| ||| || ||||| || || || || | ||||||||| || | Sbjct 332225 TCTTGGCTTTGACATTCTCAATTGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGC 332284 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCATT 68462 | ||||||||||| || || || |||||| Sbjct 332285 CAGTGAGGGTCTTCACAAAGATTTGCATT 332313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921498729794200