Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq10555 98.7 8e-16 seq183 96.9 3e-15 >seq10555 Length=3328687 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || || |||||| || || |||||| Sbjct 3315697 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTACCA 3315756 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | |||||| ||||| |||||||||||||| || || ||||| ||| Sbjct 3315757 GCGAAGATCAAACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTTGGCTTTG 3315816 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | | || || || | || | || ||||| ||||| || Sbjct 3315817 ACGTTCTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTCTTGCCAGTCAGCGTC 3315876 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 3315877 TTCACGAAGATCTGCAT 3315893 >seq183 Length=784777 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||| ||| || || || |||||| || ||||| || Sbjct 331888 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCG 331947 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| || || || ||||||||||||||||| ||||| || Sbjct 331948 GCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTC 332007 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| | | || || || | ||| | || ||||| ||||| || Sbjct 332008 ACGTTCTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 332067 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || || || ||||||||| || Sbjct 332068 TTCACGAAGATCTGCATGCCT 332088 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || || ||||| ||| || || || |||||| || || || ||| Sbjct 332116 GTGGACTCTTTCTGGATATTGTAGTCGGACAAGGTGCGTCCATCTTCCAGCTGCTTGCCA 332175 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | | ||| ||||| || ||||||||||||||||| ||||| ||| Sbjct 332176 GCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTG 332235 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | | || || || | ||| | || ||||| || || || Sbjct 332236 ACATTCTCAATTGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 332295 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| || ||||| Sbjct 332296 TTCACAAAGATTTGCAT 332312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420079432634820