Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq4474 96.9 7e-15
seq10547 87.8 3e-12
seq10599 86.0 1e-11
>seq4474
Length=14602
Score = 96.9 bits (106), Expect = 7e-15
Identities = 99/127 (78%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765
|||| |||||| | || || || || ||||||||||| || | || || |||||||||
Sbjct 5121 TGGTGGCCTTTGCTGCTGTGGAAGGAATCTTCTTCTCAGGTTCTTTTGCTGCCATCTTCT 5180
Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824
||||||| ||| ||| || ||||| || || |||||||| || || |||||||||||
Sbjct 5181 GGCTCAAAAAGAGAGGACTC-ATGCCTGGCCTTACCTTCTCCAATGAGCTCATCAGCAGA 5239
Query 42825 GACGAGG 42831
|| ||||
Sbjct 5240 GATGAGG 5246
>seq10547
Length=7526941
Score = 87.8 bits (96), Expect = 3e-12
Identities = 103/137 (75%), Gaps = 2/137 (1%)
Strand=Plus/Minus
Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755
|| ||||| || |||| ||| | || || || |||||||| ||||| || | || ||
Sbjct 2162858 GGGGAGAGATTGATAGCATTTGCAGCAGTTGAAGGCATCTTTTTCTCTGGGTCGTTTGCT 2162799
Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814
|||||| |||||| ||| | | |||| | |||||| ||||| || | ||| || || ||
Sbjct 2162798 GCCATCTACTGGCTGAAGAAAAGAGGTTT-GATGCCTGGACTTACATACTCAAATGAGCT 2162740
Query 42815 CATCAGCAGGGACGAGG 42831
||||||||| || ||||
Sbjct 2162739 CATCAGCAGAGATGAGG 2162723
>seq10599
Length=2284473
Score = 86.0 bits (94), Expect = 1e-11
Identities = 102/133 (77%), Gaps = 8/133 (6%)
Strand=Plus/Minus
Query 243168 GAGTGGTGTAAGCGAACCGACGTGGGTCTGCCCAAGCCCGACCTGGTGGTGTTCCTGGCC 243227
|| |||||||||| | || ||||| || || ||||| ||||||||| |||||||| |
Sbjct 790949 GACTGGTGTAAGCAGCCTGATGTGGGCCTACCAAAGCCGGACCTGGTGATGTTCCTG--C 790892
Query 243228 ATC-GAGGCCTCCGCCGTGG-AGAGCAGAGGCGGC--TTCGGCGACGAGCGGTACGAGGT 243283
| | ||| ||| | |||| || ||| || ||| ||||| | ||||||||||||| |
Sbjct 790891 AGCTGAGCCCTGAG--GTGGCAGCTCAGCGGGGGCAGTTCGGAGCCGAGCGGTACGAGAT 790834
Query 243284 CAGCGCCTTCCAG 243296
|||| ||||||||
Sbjct 790833 CAGCTCCTTCCAG 790821
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944212481483600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |