Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4474 96.9 7e-15 seq10547 87.8 3e-12 seq10599 86.0 1e-11 >seq4474 Length=14602 Score = 96.9 bits (106), Expect = 7e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| | || || || || ||||||||||| || | || || ||||||||| Sbjct 5121 TGGTGGCCTTTGCTGCTGTGGAAGGAATCTTCTTCTCAGGTTCTTTTGCTGCCATCTTCT 5180 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 ||||||| ||| ||| || ||||| || || |||||||| || || ||||||||||| Sbjct 5181 GGCTCAAAAAGAGAGGACTC-ATGCCTGGCCTTACCTTCTCCAATGAGCTCATCAGCAGA 5239 Query 42825 GACGAGG 42831 || |||| Sbjct 5240 GATGAGG 5246 >seq10547 Length=7526941 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| || |||| ||| | || || || |||||||| ||||| || | || || Sbjct 2162858 GGGGAGAGATTGATAGCATTTGCAGCAGTTGAAGGCATCTTTTTCTCTGGGTCGTTTGCT 2162799 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 |||||| |||||| ||| | | |||| | |||||| ||||| || | ||| || || || Sbjct 2162798 GCCATCTACTGGCTGAAGAAAAGAGGTTT-GATGCCTGGACTTACATACTCAAATGAGCT 2162740 Query 42815 CATCAGCAGGGACGAGG 42831 ||||||||| || |||| Sbjct 2162739 CATCAGCAGAGATGAGG 2162723 >seq10599 Length=2284473 Score = 86.0 bits (94), Expect = 1e-11 Identities = 102/133 (77%), Gaps = 8/133 (6%) Strand=Plus/Minus Query 243168 GAGTGGTGTAAGCGAACCGACGTGGGTCTGCCCAAGCCCGACCTGGTGGTGTTCCTGGCC 243227 || |||||||||| | || ||||| || || ||||| ||||||||| |||||||| | Sbjct 790949 GACTGGTGTAAGCAGCCTGATGTGGGCCTACCAAAGCCGGACCTGGTGATGTTCCTG--C 790892 Query 243228 ATC-GAGGCCTCCGCCGTGG-AGAGCAGAGGCGGC--TTCGGCGACGAGCGGTACGAGGT 243283 | | ||| ||| | |||| || ||| || ||| ||||| | ||||||||||||| | Sbjct 790891 AGCTGAGCCCTGAG--GTGGCAGCTCAGCGGGGGCAGTTCGGAGCCGAGCGGTACGAGAT 790834 Query 243284 CAGCGCCTTCCAG 243296 |||| |||||||| Sbjct 790833 CAGCTCCTTCCAG 790821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944212481483600