Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq10555 161 2e-34
>seq10555
Length=3328687
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| || ||||| | || |||||||| | ||| || || ||||| || |||||||
Sbjct 3315211 CCGCCACGGAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3315270
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| |||||||| ||||| | || || || || |||||||||||||| || ||||
Sbjct 3315271 AGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGG 3315330
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
||||| || |||||||||||||| || ||||| ||||| || | || || | || |||
Sbjct 3315331 ATTCCCTCCTTATCCTGGATTTTAGCCTTCACATTTTCAATGGTGTCACTTGGCTCCACT 3315390
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||| || ||||| ||||| ||||| ||||||||
Sbjct 3315391 TCGAGAGTGATGGTCTTACCAGTCAGCGTCTTCACGAAGATCTGCAT 3315437
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321
|| |||||||| | ||| || || ||||| || ||||||| || |||||||| |||
Sbjct 3315682 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 3315741
Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381
|| | || || || |||||||||| |||||| || || || ||||| ||||||
Sbjct 3315742 TCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCC 3315801
Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441
||||| || ||||| ||||| || || | || || | || |||||||| ||||| |||
Sbjct 3315802 TGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTC 3315861
Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| ||||| ||||| ||||||||
Sbjct 3315862 TTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 3315893
Score = 140 bits (154), Expect = 8e-28
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336
|| || || || ||||| || ||||||| ||| || || || ||||| | || || ||
Sbjct 3315469 GTACTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCATCTTCAAGCTGCTTACCG 3315528
Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396
|| |||||||||||||| || | ||||||||| || ||||| ||||| || |||||
Sbjct 3315529 GCAAAGATCAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTATCTTGGATCTTGGCTTTG 3315588
Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456
||||| || |||| ||||| | ||| || || | ||||| ||||| || || || |||
Sbjct 3315589 ACGTTCTCAATAGTGTCGCTGGGTTCCACCTCCAAGGTGATGGTCTTACCAGTGAGGGTC 3315648
Query 288457 TTGACGAATATCTGCAT 288473
||||| || ||||||||
Sbjct 3315649 TTGACAAAGATCTGCAT 3315665
Score = 138 bits (152), Expect = 3e-27
Identities = 145/191 (76%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||||| || |||||||||||||| | || || || ||||||
Sbjct 3318453 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCCAGCTGCTTACCAGCGAAG 3318512
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||||||||| || ||||||||| || ||||| ||||| || ||||| |||||
Sbjct 3318513 ATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCTTGGATCTTGGCTTTGACGTTC 3318572
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||||| | || || || | ||||| ||||| || ||||| ||||| ||
Sbjct 3318573 TCGATGGTGTCGCTTGGCTCCACCTCCAAGGTGATGGTCTTACCAGTCAGCGTCTTCACA 3318632
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 3318633 AAGATCTGCAT 3318643
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179492147753330
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |