Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq10555 154 2e-32 seq183 107 2e-18 seq10520 93.3 5e-14 seq10543 91.5 2e-13 seq5358 91.5 2e-13 seq10696 89.7 6e-13 seq10607 86.0 7e-12 seq10558 86.0 7e-12 seq516 84.2 2e-11 >seq10555 Length=3328687 Score = 154 bits (170), Expect = 2e-32 Identities = 181/245 (74%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| || | ||| | |||| || | ||| |||||| || || ||||| || | Sbjct 3318416 ACCTCCCCTCAGACGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 3318475 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || || |||| || ||||||||||||||||| || || ||||||||||||| ||| Sbjct 3318476 CAGGGTGCGTCCGTCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGG 3318535 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||| || ||| || ||||| || | | |||||||| | ||||| Sbjct 3318536 GATTCCCTCCTTATCTTGGATCTTGGCTTTGACGTTCTCGATGGTGTCGCTTGGCTCCAC 3318595 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCACGCCGAA 42220 || | |||||||| || || || |||||||| |||||||| ||||| || |||| ||| Sbjct 3318596 CTCCAAGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCATCTTTACGCTGAA 3318655 Query 42221 TACAA 42225 ||||| Sbjct 3318656 TACAA 3318660 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| || | ||| | || | ||| | ||| |||||| || || ||||| || | Sbjct 3315666 ACCTCCCCTCAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 3315725 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || || | || || ||||||||||||||||| || | ||||||||||||| || Sbjct 3315726 CAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCGGGAGG 3315785 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || ||||| ||| ||| || ||||| || | | ||||| || | ||||| Sbjct 3315786 AATGCCTTCCTTATCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGCTCCAC 3315845 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| |||||||| ||||| || |||||||| || ||||| ||||| Sbjct 3315846 TTCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 3315893 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| || | ||| | || | || | || |||||||| || || ||||| || | Sbjct 3315438 ACCTCCCCTCAGACGGAGGACAAGGTGGAGGGTACTCTCCTTCTGGATGTTGTAGTCGGA 3315497 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || ||||||||||| || || || || ||||||||||| | ||| Sbjct 3315498 GAGAGTACGACCATCTTCAAGCTGCTTACCGGCAAAGATCAGACGCTGCTGGTCAGGTGG 3315557 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||| || ||| || ||||| || | | |||||||| | |||||| Sbjct 3315558 GATTCCCTCCTTATCTTGGATCTTGGCTTTGACGTTCTCAATAGTGTCGCTGGGTTCCAC 3315617 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| || || || || ||||| |||||||| ||||| Sbjct 3315618 CTCCAAGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 3315665 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| || | ||| | ||| |||||| || || ||||| || | ||| || || | Sbjct 3315222 ACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCC 3315281 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||||||||| || || || ||||||||||||| ||| | | |||||| Sbjct 3315282 ATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTT 3315341 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| |||||| || | | | | ||||| || | ||||| |||| ||||| Sbjct 3315342 ATCCTGGATTTTAGCCTTCACATTTTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGAT 3315401 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || || |||||||| || ||||| ||||| Sbjct 3315402 GGTCTTACCAGTCAGCGTCTTCACGAAGATCTGCAT 3315437 >seq183 Length=784777 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || | ||| | || | ||| | ||| ||| || || |||||||| || | | Sbjct 332086 CCTCCCCTGAGACGAAGGACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAGTCGGAC 332145 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || | || || |||||||| |||||||| || | | ||||||||| | || Sbjct 332146 AAGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 332205 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || || |||||| ||| || ||||| || | | ||||| || | || || Sbjct 332206 ATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTCTCAATTGTGTCACTTGGCTCAACC 332265 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 42210 || | |||||||| ||||| || || ||||| |||||||||||||||| Sbjct 332266 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATTTGCATTT 332314 >seq10520 Length=3642855 Score = 93.3 bits (102), Expect = 5e-14 Identities = 73/86 (85%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 56998 AAAAATTT-TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||| ||| ||||| || | | ||| |||||| ||||||||||||||||||||| ||| Sbjct 1859927 AAAAGTTTATCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1859986 Query 57057 CTCACCACTATACTACCGAGGATTGA 57082 ||||||||||||||| |||||| ||| Sbjct 1859987 CTCACCACTATACTAACGAGGAGTGA 1860012 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 1864597 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 1864656 Query 57065 TATACTACCGAGGATTGA 57082 ||||||| |||||| ||| Sbjct 1864657 TATACTAACGAGGAGTGA 1864674 >seq10543 Length=3469552 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 || |||||| || | | |||||||||| ||||| |||||||||||||||| ||||| | Sbjct 1617063 ATGTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTATC 1617122 Query 57062 CACTATACTACCGAGGATTGAATATATA 57089 |||||||||| |||||| ||| | |||| Sbjct 1617123 CACTATACTAACGAGGAGTGAGTGTATA 1617150 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | |||||||||| ||||| |||||||||||||||| ||||| ||| Sbjct 1617556 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCA 1617615 Query 57064 CTATACTACCGAGGATTGA 57082 |||||||| |||||| ||| Sbjct 1617616 CTATACTAACGAGGAGTGA 1617634 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | |||||||||| ||||| |||||||||||||||| ||||| ||| Sbjct 1618025 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCA 1618084 Query 57064 CTATACTACCGAGGATTG 57081 |||||||| |||||| || Sbjct 1618085 CTATACTAACGAGGAGTG 1618102 >seq5358 Length=4687 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 2345 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2286 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 2285 ATACTAACGAGGA 2273 >seq10696 Length=1481488 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 |||||||| | | |||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 848992 TCTCCTCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 848933 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 848932 ATACTAACGAGGAT 848919 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 845757 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 845816 Query 57066 ATACTACCGAGGATT 57080 |||||| |||||||| Sbjct 845817 ATACTAACGAGGATT 845831 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 815349 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 815408 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 815409 ATACTAACGAGGAT 815422 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 816133 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 816192 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 816193 ATACTAACGAGGAT 816206 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 819265 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 819206 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 819205 ATACTAACGAGGA 819193 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 849628 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 849569 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 849568 TACTAACGAGGAT 849556 >seq10607 Length=2140885 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1068588 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1068647 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 1068648 TACTAACGAGGA 1068659 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1074584 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1074643 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 1074644 TACTAACGAGGA 1074655 >seq10558 Length=2852526 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/81 (84%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||||| |||| || | | |||||||||| ||||| |||||||||||||||| |||| Sbjct 2035419 AAAAATT--CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATAC 2035476 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||| |||||| Sbjct 2035477 TGTCCACTATACTAACGAGGA 2035497 >seq516 Length=255305 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 25564 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 25505 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 25504 ATACTAACGAGGAT 25491 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 29038 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 28979 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 28978 ATACTAACGAGGAT 28965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543139907632400