Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq10555 154 2e-32
seq183 107 2e-18
seq10520 93.3 5e-14
seq10543 91.5 2e-13
seq5358 91.5 2e-13
seq10696 89.7 6e-13
seq10607 86.0 7e-12
seq10558 86.0 7e-12
seq516 84.2 2e-11
>seq10555
Length=3328687
Score = 154 bits (170), Expect = 2e-32
Identities = 181/245 (74%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
|||||| || | ||| | |||| || | ||| |||||| || || ||||| || |
Sbjct 3318416 ACCTCCCCTCAGACGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 3318475
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
||| || || |||| || ||||||||||||||||| || || ||||||||||||| |||
Sbjct 3318476 CAGGGTGCGTCCGTCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGG 3318535
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| | |||||| || ||| || ||||| || | | |||||||| | |||||
Sbjct 3318536 GATTCCCTCCTTATCTTGGATCTTGGCTTTGACGTTCTCGATGGTGTCGCTTGGCTCCAC 3318595
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCACGCCGAA 42220
|| | |||||||| || || || |||||||| |||||||| ||||| || |||| |||
Sbjct 3318596 CTCCAAGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCATCTTTACGCTGAA 3318655
Query 42221 TACAA 42225
|||||
Sbjct 3318656 TACAA 3318660
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
|||||| || | ||| | || | ||| | ||| |||||| || || ||||| || |
Sbjct 3315666 ACCTCCCCTCAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 3315725
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
||| || || | || || ||||||||||||||||| || | ||||||||||||| ||
Sbjct 3315726 CAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCGGGAGG 3315785
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| || ||||| ||| ||| || ||||| || | | ||||| || | |||||
Sbjct 3315786 AATGCCTTCCTTATCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGCTCCAC 3315845
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||| |||||||| ||||| || |||||||| || ||||| |||||
Sbjct 3315846 TTCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 3315893
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
|||||| || | ||| | || | || | || |||||||| || || ||||| || |
Sbjct 3315438 ACCTCCCCTCAGACGGAGGACAAGGTGGAGGGTACTCTCCTTCTGGATGTTGTAGTCGGA 3315497
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
||||| || | || || ||||||||||| || || || || ||||||||||| | |||
Sbjct 3315498 GAGAGTACGACCATCTTCAAGCTGCTTACCGGCAAAGATCAGACGCTGCTGGTCAGGTGG 3315557
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| | |||||| || ||| || ||||| || | | |||||||| | ||||||
Sbjct 3315558 GATTCCCTCCTTATCTTGGATCTTGGCTTTGACGTTCTCAATAGTGTCGCTGGGTTCCAC 3315617
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| | |||||||| || || || || ||||| |||||||| |||||
Sbjct 3315618 CTCCAAGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 3315665
Score = 114 bits (126), Expect = 1e-20
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||||| || | ||| | ||| |||||| || || ||||| || | ||| || || |
Sbjct 3315222 ACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCC 3315281
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || |||||||||||||| || || || ||||||||||||| ||| | | ||||||
Sbjct 3315282 ATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTT 3315341
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
||| |||||| || | | | | ||||| || | ||||| |||| |||||
Sbjct 3315342 ATCCTGGATTTTAGCCTTCACATTTTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGAT 3315401
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| || || || |||||||| || ||||| |||||
Sbjct 3315402 GGTCTTACCAGTCAGCGTCTTCACGAAGATCTGCAT 3315437
>seq183
Length=784777
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
||||| || | ||| | || | ||| | ||| ||| || || |||||||| || | |
Sbjct 332086 CCTCCCCTGAGACGAAGGACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAGTCGGAC 332145
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
| || || | || || |||||||| |||||||| || | | ||||||||| | ||
Sbjct 332146 AAGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 332205
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161
| || || |||||| ||| || ||||| || | | ||||| || | || ||
Sbjct 332206 ATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTCTCAATTGTGTCACTTGGCTCAACC 332265
Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 42210
|| | |||||||| ||||| || || ||||| ||||||||||||||||
Sbjct 332266 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATTTGCATTT 332314
>seq10520
Length=3642855
Score = 93.3 bits (102), Expect = 5e-14
Identities = 73/86 (85%), Gaps = 1/86 (1%)
Strand=Plus/Plus
Query 56998 AAAAATTT-TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056
|||| ||| ||||| || | | ||| |||||| ||||||||||||||||||||| |||
Sbjct 1859927 AAAAGTTTATCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1859986
Query 57057 CTCACCACTATACTACCGAGGATTGA 57082
||||||||||||||| |||||| |||
Sbjct 1859987 CTCACCACTATACTAACGAGGAGTGA 1860012
Score = 91.5 bits (100), Expect = 2e-13
Identities = 67/78 (86%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064
|||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct 1864597 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 1864656
Query 57065 TATACTACCGAGGATTGA 57082
||||||| |||||| |||
Sbjct 1864657 TATACTAACGAGGAGTGA 1864674
>seq10543
Length=3469552
Score = 91.5 bits (100), Expect = 2e-13
Identities = 73/88 (83%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061
|| |||||| || | | |||||||||| ||||| |||||||||||||||| ||||| |
Sbjct 1617063 ATGTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTATC 1617122
Query 57062 CACTATACTACCGAGGATTGAATATATA 57089
|||||||||| |||||| ||| | ||||
Sbjct 1617123 CACTATACTAACGAGGAGTGAGTGTATA 1617150
Score = 89.7 bits (98), Expect = 6e-13
Identities = 67/79 (85%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063
||||||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||
Sbjct 1617556 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCA 1617615
Query 57064 CTATACTACCGAGGATTGA 57082
|||||||| |||||| |||
Sbjct 1617616 CTATACTAACGAGGAGTGA 1617634
Score = 87.8 bits (96), Expect = 2e-12
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063
||||||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||
Sbjct 1618025 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCA 1618084
Query 57064 CTATACTACCGAGGATTG 57081
|||||||| |||||| ||
Sbjct 1618085 CTATACTAACGAGGAGTG 1618102
>seq5358
Length=4687
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 2345 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2286
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 2285 ATACTAACGAGGA 2273
>seq10696
Length=1481488
Score = 89.7 bits (98), Expect = 6e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
|||||||| | | |||||||||| ||||| |||||||||||||||| ||||| |||||
Sbjct 848992 TCTCCTCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 848933
Query 57066 ATACTACCGAGGAT 57079
|||||| |||||||
Sbjct 848932 ATACTAACGAGGAT 848919
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||
Sbjct 845757 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 845816
Query 57066 ATACTACCGAGGATT 57080
|||||| ||||||||
Sbjct 845817 ATACTAACGAGGATT 845831
Score = 84.2 bits (92), Expect = 2e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||
Sbjct 815349 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 815408
Query 57066 ATACTACCGAGGAT 57079
|||||| |||||||
Sbjct 815409 ATACTAACGAGGAT 815422
Score = 84.2 bits (92), Expect = 2e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||
Sbjct 816133 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 816192
Query 57066 ATACTACCGAGGAT 57079
|||||| |||||||
Sbjct 816193 ATACTAACGAGGAT 816206
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||
Sbjct 819265 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 819206
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 819205 ATACTAACGAGGA 819193
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||| |||||||||||||||| ||||| ||||||
Sbjct 849628 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 849569
Query 57067 TACTACCGAGGAT 57079
||||| |||||||
Sbjct 849568 TACTAACGAGGAT 849556
>seq10607
Length=2140885
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 1068588 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1068647
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 1068648 TACTAACGAGGA 1068659
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 1074584 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1074643
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 1074644 TACTAACGAGGA 1074655
>seq10558
Length=2852526
Score = 86.0 bits (94), Expect = 7e-12
Identities = 68/81 (84%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
||||||| |||| || | | |||||||||| ||||| |||||||||||||||| ||||
Sbjct 2035419 AAAAATT--CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATAC 2035476
Query 57058 TCACCACTATACTACCGAGGA 57078
| ||||||||||| ||||||
Sbjct 2035477 TGTCCACTATACTAACGAGGA 2035497
>seq516
Length=255305
Score = 84.2 bits (92), Expect = 2e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||
Sbjct 25564 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 25505
Query 57066 ATACTACCGAGGAT 57079
|||||| |||||||
Sbjct 25504 ATACTAACGAGGAT 25491
Score = 84.2 bits (92), Expect = 2e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||
Sbjct 29038 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 28979
Query 57066 ATACTACCGAGGAT 57079
|||||| |||||||
Sbjct 28978 ATACTAACGAGGAT 28965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543139907632400
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