Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq10555 116 4e-21
seq183 113 5e-20
>seq10555
Length=3328687
Score = 116 bits (128), Expect = 4e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||| | || || || || || |||||||| || | | |||||| | |||
Sbjct 3315226 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 3315285
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| |||||||| || ||| | || || |||||||||||||| || ||||| || || ||
Sbjct 3315286 TCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCC 3315345
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| ||||| ||| ||| || | || |||| | |||||||| | ||| | ||||
Sbjct 3315346 TGGATTTTAGCCTTCACATTTTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTC 3315405
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| || |||| || || ||||| || |||||
Sbjct 3315406 TTACCAGTCAGCGTCTTCACGAAGATCTGCAT 3315437
Score = 116 bits (128), Expect = 4e-21
Identities = 155/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||| | || || || || || |||||||| || | | |||||| | |||
Sbjct 3315682 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 3315741
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| |||||||| || || | || | |||||||||||||||||||| ||||| || ||
Sbjct 3315742 TCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCC 3315801
Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| | | || ||||| || ||| | || |||| | |||||||| | ||| | |||
Sbjct 3315802 TGGA-TCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGT 3315860
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||||| |||| || || ||||| || |||||
Sbjct 3315861 CTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 3315893
Score = 96.9 bits (106), Expect = 3e-15
Identities = 153/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || || || | || || || || || |||||||| || | | |||||| ||||
Sbjct 3318431 AAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTC 3318490
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||| |||||||| || || | || || |||||||||||||| || ||||| || || ||
Sbjct 3318491 TTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATC 3318550
Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409
||| | | || ||||| || ||| | || || | | ||||| || | || | ||
Sbjct 3318551 TTGGA-TCTTGGCTTTGACGTTCTCGATGGTGTCGCTTGGCTCCACCTCCAAGGTGATGG 3318609
Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|||| || |||| || || || || || ||||| ||
Sbjct 3318610 TCTTACCAGTCAGCGTCTTCACAAAGATCTGCATCTT 3318646
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312
|| || || |||||||| || | || || || | |||||||||||||| |||||| |
Sbjct 3315475 TCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCATCTTCAAGCTGCTTACCGGCAAAG 3315534
Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAAC 64371
|| || ||||||||||| || || ||||| || || ||||| | | || ||||| ||
Sbjct 3315535 ATCAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTATCTTGGA-TCTTGGCTTTGACGTT 3315593
Query 64372 CTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431
||| | || || | || ||||| || | || | |||||| || || | || || ||
Sbjct 3315594 CTCAATAGTGTCGCTGGGTTCCACCTCCAAGGTGATGGTCTTACCAGTGAGGGTCTTGAC 3315653
Query 64432 GAAAATTTGCAT 64443
|| || |||||
Sbjct 3315654 AAAGATCTGCAT 3315665
>seq183
Length=784777
Score = 113 bits (124), Expect = 5e-20
Identities = 156/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || ||||| | || || ||||| || || ||||| || | | |||||| | ||
Sbjct 332100 AAGGACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAGTCGGACAAGGTGCGTCCATC 332159
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||| ||||||||||| || | || | || ||||||||| || ||||| |||||||| ||
Sbjct 332160 TTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTC 332219
Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409
|| | | || ||||| ||| ||| | ||| |||| | || || || | || | ||
Sbjct 332220 CTGGA-TCTTGGCTTTGACATTCTCAATTGTGTCACTTGGCTCAACCTCAAGGGTGATGG 332278
Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTT 64445
||||||| || | || || || || ||||||||||
Sbjct 332279 TCTTGCCAGTGAGGGTCTTCACAAAGATTTGCATTT 332314
Score = 104 bits (114), Expect = 2e-17
Identities = 155/217 (71%), Gaps = 6/217 (3%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| || || | || || || || || |||||||| || | | ||||||| | |||
Sbjct 331641 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 331700
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCG----CTGCTGGTCGGGAGGAATTCCTTCTTT 64347
|| ||||| ||||||||| | || | || |||||| || || ||||| || |||||
Sbjct 331701 TCCAGCTGTTTGCCGGCAAAGATCAACCAACCTCTGCTGATCTGGGGGAATGCCCTCTTT 331760
Query 64348 TTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTA 64406
||||| || || ||||| ||| ||| | || || | | || || || | || |
Sbjct 331761 GTCTTGGATCTTG-GCTTTGACATTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGA 331819
Query 64407 CGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||||||||||||| || |||||||| || |||||
Sbjct 331820 TGGTCTTGCCGGTCAGGGTCTTTACGAAGATCTGCAT 331856
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499577753913400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |