Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq10555 109 5e-19 seq183 87.8 2e-12 >seq10555 Length=3328687 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||||| || | ||| | | | |||||||| || |||||||||||| Sbjct 3315210 GCCGCCACGGAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 3315269 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || || || ||||| | | |||| |||||||| ||||| || || Sbjct 3315270 CAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGG 3315329 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || || || |||||| || | | ||| | |||||| | | |||||| Sbjct 3315330 GATTCCCTCCTTATCCTGGATTTTAGCCTTCACATTTTCAATGGTGTCACTTGGCTCCAC 3315389 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || ||||||||||| || || || || |||||||| Sbjct 3315390 TTCGAGAGTGATGGTCTTACCAGTCAGCGTCTTCACGAAGATCTGCAT 3315437 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || ||| || || || ||||| | Sbjct 3318450 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCCAGCTGCTTACCAGCG 3318509 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || || || || || || ||| || ||| | Sbjct 3318510 AAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCTTGGATCTTGGCTTTGACG 3318569 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | ||||||||| | || | || ||||||||||| || || Sbjct 3318570 TTCTCGATGGTGTCGCTTGGCTCCACCTCCAAGGTGATGGTCTTACCAGTCAGCGTCTTC 3318629 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 3318630 ACAAAGATCTGCAT 3318643 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||| | |||||| || || || || ||||||| | | Sbjct 3315474 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCATCTTCAAGCTGCTTACCGGCAAA 3315533 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| |||||||| ||||| || || || || || || || ||| || ||| | | Sbjct 3315534 GATCAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTATCTTGGATCTTGGCTTTGACGTT 3315593 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||| | | |||||||| | || | || |||||||| || || || || Sbjct 3315594 CTCAATAGTGTCGCTGGGTTCCACCTCCAAGGTGATGGTCTTACCAGTGAGGGTCTTGAC 3315653 Query 138603 AAAAATCTGCAT 138614 ||| |||||||| Sbjct 3315654 AAAGATCTGCAT 3315665 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | || ||| | || | ||| | | | |||||||| || |||||||||||| | Sbjct 3315667 CCTCCCCTCAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3315726 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || ||||| | |||| | |||||| ||||| ||||| Sbjct 3315727 AGGGTGCGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCGGGAGGA 3315786 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| || || ||| || ||| | | || | |||||| | | |||||| Sbjct 3315787 ATGCCTTCCTTATCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGCTCCACT 3315846 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || |||||||| || || || || |||||||| Sbjct 3315847 TCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 3315893 >seq183 Length=784777 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || || || |||||||||||| || || ||| || || || ||||| |||| | Sbjct 331891 GATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCA 331950 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | | ||| || || || || || ||||||||||| ||| || || | Sbjct 331951 AAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACG 332010 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | ||| ||||||| || | || || |||||||| || || Sbjct 332011 TTCTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 332070 Query 138601 ACAAAAATCTGCATGGCT 138618 || || ||||||||| || Sbjct 332071 ACGAAGATCTGCATGCCT 332088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496195807789200