Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq183 95.1 1e-14 >seq183 Length=784777 Score = 95.1 bits (104), Expect = 1e-14 Identities = 155/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || ||||| || || || ||||| || || ||||| | Sbjct 331638 CGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 331697 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCG----CTGCTGATCGGGAGGTATGCCCTC 127014 || || |||||||| || || ||||||| | ||||||||| || || |||||||| Sbjct 331698 TCTTCCAGCTGTTTGCCGGCAAAGATCAACCAACCTCTGCTGATCTGGGGGAATGCCCTC 331757 Query 127015 CTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 ||||| ||| || |||| | || | |||||| | ||| || || | ||| Sbjct 331758 TTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGT 331817 Query 127075 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 | || ||||||||||| || ||||| || ||||||||| || Sbjct 331818 GATGGTCTTGCCGGTCAGGGTCTTTACGAAGATCTGCATGCCT 331860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475436993736400