Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq10555 96.9 3e-15
seq183 82.4 7e-11
>seq10555
Length=3328687
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| ||||| || || || ||||| ||||| || || ||| | ||| ||| |||
Sbjct 3315685 ACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCC 3315744
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| || || || ||| | ||||| || |||||||| || ||||||||||| ||||| ||
Sbjct 3315745 AGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGG 3315804
Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
|| || ||||| || | || | |||||| | ||| ||||||||||| | || ||
Sbjct 3315805 ATCTTGGCTTTGA-CGTTCTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTCTT 3315863
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||| || || || || || || || |||||
Sbjct 3315864 GCCAGTCAGCGTCTTCACGAAGATCTGCAT 3315893
>seq183
Length=784777
Score = 82.4 bits (90), Expect = 7e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||| | ||| | | || ||||| || || || || || |||||||| || |||
Sbjct 332083 ATGCCTCCCCTGAGACGAAGGACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAGTCG 332142
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| ||| |||| || || || ||| | ||||| | |||||||| ||
Sbjct 332143 GACAAGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGG 332202
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|||||||||||||| || || || || ||||| || | ||||| | |||
Sbjct 332203 GGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTCTCAATTGTGTCACTTGGCTCA 332262
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || || | || ||||| || || || || ||||| ||||||||
Sbjct 332263 ACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATTTGCAT 332312
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451942546820600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |