Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq10513 120 4e-22 seq10511 120 4e-22 >seq10513 Length=4150252 Score = 120 bits (132), Expect = 4e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 8948 ATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATG 9007 || || || || || | || ||||| |||||||| ||||||||| | |||||||| ||| Sbjct 2696689 ATATCAAATCCAACTTTGCCACCGAATGTGCTGGGCTTCCAGTACTCAGGGGAGCAAATG 2696630 Query 9008 ACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCG 9067 ||| |||| || ||||||| || | || || |||| ||| | ||| | || ||| Sbjct 2696629 GGGTTTCCCATAAGGCCTTTCAGAGAGTATGGGGCACCCATCTCCACCATGGTTTCCCCG 2696570 Query 9068 AAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCG 9127 |||||||| | | ||||| || || | | || ||||| || || || || || Sbjct 2696569 AAGATGGCGTTCTGTCTAGGTTTCTCCACTAGCAGACCGGTGTATAGCTCCACGGCGTCC 2696510 Query 9128 ACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 || || ||||| || | |||| ||| || || ||||||||||||||| || Sbjct 2696509 ACCTCTCCATACAGCTCCTCCAGCTCTGCCGCCATCTCCTTCTCACCTGCA 2696459 Score = 96.9 bits (106), Expect = 5e-15 Identities = 131/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 9541 ATGCGAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCT 9600 ||| |||| |||||||||| || | |||||| ||||||| || || ||||| | | Sbjct 2695033 ATGTGAAAGTCATCAGGCATGAGTGGGTGCCAGTGGTAGAGAGTGTTAAACTCAGAGGAG 2694974 Query 9601 ATTCGGTTCTGGTACTGAAAGGCGGT-ACCGAACAGTAACTCCGGGTCAAAGATTAGCTG 9659 || ||||||||||||||||| || | ||| || | ||| || || || | |||| Sbjct 2694973 ATCCGGTTCTGGTACTGAAA-ACGCTCTTTGAAGAGGAGCTCTGGATCGAATTTGAGCTT 2694915 Query 9660 GAAGTGGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 ||||||||| ||||| | ||||| ||||| | | || | ||| |||||||| || || Sbjct 2694914 GAAGTGGTAGCCGCTCAAGTGCTGCACATAATCTTCAATCACAATCTTAATGGTCTCACC 2694855 >seq10511 Length=4527151 Score = 120 bits (132), Expect = 4e-22 Identities = 173/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||| | ||||| || || || || || || ||||| |||||||| |||||||| | Sbjct 1118255 GCGCTGTTCACTATATCGAACCCCACCGTGCCACCGAACGTGCTGGGCATCCAGTACTCA 1118314 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| ||| ||| || ||||||| ||| || ||||| |||| ||| | Sbjct 1118315 GGGGAGCAGATGGGGTTTCCCAGCAGGCCTTTCAGGGAGAAGGGAGCTCCCATCTCCACC 1118374 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||| |||| ||||| | || ||||| | || || || || | | |||| ||| || Sbjct 1118375 ATGGTCTCTCCGAACACAGCCCCGGGCCTGGGCTTCTCCACCAGCAGCCCAGAGTACAGC 1118434 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || || ||| || || ||||| || |||| ||| || || | |||||| || ||| Sbjct 1118435 TCCACCAGCTCCACATCTCCATACAGCTTCTCCAGCTCCGCCGCCAGCTCCTTATCTCCT 1118494 Query 9176 ACAA 9179 |||| Sbjct 1118495 ACAA 1118498 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 || |||| ||| | |||||| |||| || || |||||||||| || || ||||||||| Sbjct 1119841 TCGGGCATCAGCGGGTGCCAGTGGTACAGCGTGTTGAACTCGGAGGCGATCCGGTTCTGG 1119900 Query 9613 TACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCG 9672 ||||| || | ||| || | |||||||||||| | |||| ||||||||| || Sbjct 1119901 TACTGGAACCTCTGGCTGAAGAGCAGCTCCGGGTCAAACTTCAGCTTGAAGTGGTATCCA 1119960 Query 9673 CTGAGTTGCTGGACATA 9689 || || |||||||| || Sbjct 1119961 CTCAGGTGCTGGACGTA 1119977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723630884749000