Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq10513 120 4e-22
seq10511 120 4e-22
>seq10513
Length=4150252
Score = 120 bits (132), Expect = 4e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 8948 ATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATG 9007
|| || || || || | || ||||| |||||||| ||||||||| | |||||||| |||
Sbjct 2696689 ATATCAAATCCAACTTTGCCACCGAATGTGCTGGGCTTCCAGTACTCAGGGGAGCAAATG 2696630
Query 9008 ACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCG 9067
||| |||| || ||||||| || | || || |||| ||| | ||| | || |||
Sbjct 2696629 GGGTTTCCCATAAGGCCTTTCAGAGAGTATGGGGCACCCATCTCCACCATGGTTTCCCCG 2696570
Query 9068 AAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCG 9127
|||||||| | | ||||| || || | | || ||||| || || || || ||
Sbjct 2696569 AAGATGGCGTTCTGTCTAGGTTTCTCCACTAGCAGACCGGTGTATAGCTCCACGGCGTCC 2696510
Query 9128 ACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178
|| || ||||| || | |||| ||| || || ||||||||||||||| ||
Sbjct 2696509 ACCTCTCCATACAGCTCCTCCAGCTCTGCCGCCATCTCCTTCTCACCTGCA 2696459
Score = 96.9 bits (106), Expect = 5e-15
Identities = 131/180 (73%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 9541 ATGCGAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCT 9600
||| |||| |||||||||| || | |||||| ||||||| || || ||||| | |
Sbjct 2695033 ATGTGAAAGTCATCAGGCATGAGTGGGTGCCAGTGGTAGAGAGTGTTAAACTCAGAGGAG 2694974
Query 9601 ATTCGGTTCTGGTACTGAAAGGCGGT-ACCGAACAGTAACTCCGGGTCAAAGATTAGCTG 9659
|| ||||||||||||||||| || | ||| || | ||| || || || | ||||
Sbjct 2694973 ATCCGGTTCTGGTACTGAAA-ACGCTCTTTGAAGAGGAGCTCTGGATCGAATTTGAGCTT 2694915
Query 9660 GAAGTGGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719
||||||||| ||||| | ||||| ||||| | | || | ||| |||||||| || ||
Sbjct 2694914 GAAGTGGTAGCCGCTCAAGTGCTGCACATAATCTTCAATCACAATCTTAATGGTCTCACC 2694855
>seq10511
Length=4527151
Score = 120 bits (132), Expect = 4e-22
Identities = 173/244 (71%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995
||| | ||||| || || || || || || ||||| |||||||| |||||||| |
Sbjct 1118255 GCGCTGTTCACTATATCGAACCCCACCGTGCCACCGAACGTGCTGGGCATCCAGTACTCA 1118314
Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055
|||||||||||| ||| ||| || ||||||| ||| || ||||| |||| ||| |
Sbjct 1118315 GGGGAGCAGATGGGGTTTCCCAGCAGGCCTTTCAGGGAGAAGGGAGCTCCCATCTCCACC 1118374
Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115
||| |||| ||||| | || ||||| | || || || || | | |||| ||| ||
Sbjct 1118375 ATGGTCTCTCCGAACACAGCCCCGGGCCTGGGCTTCTCCACCAGCAGCCCAGAGTACAGC 1118434
Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
|| || ||| || || ||||| || |||| ||| || || | |||||| || |||
Sbjct 1118435 TCCACCAGCTCCACATCTCCATACAGCTTCTCCAGCTCCGCCGCCAGCTCCTTATCTCCT 1118494
Query 9176 ACAA 9179
||||
Sbjct 1118495 ACAA 1118498
Score = 95.1 bits (104), Expect = 2e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612
|| |||| ||| | |||||| |||| || || |||||||||| || || |||||||||
Sbjct 1119841 TCGGGCATCAGCGGGTGCCAGTGGTACAGCGTGTTGAACTCGGAGGCGATCCGGTTCTGG 1119900
Query 9613 TACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCG 9672
||||| || | ||| || | |||||||||||| | |||| ||||||||| ||
Sbjct 1119901 TACTGGAACCTCTGGCTGAAGAGCAGCTCCGGGTCAAACTTCAGCTTGAAGTGGTATCCA 1119960
Query 9673 CTGAGTTGCTGGACATA 9689
|| || |||||||| ||
Sbjct 1119961 CTCAGGTGCTGGACGTA 1119977
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723630884749000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |