Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq10607 102 1e-16 >seq10607 Length=2140885 Score = 102 bits (112), Expect = 1e-16 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 |||| ||| | ||||||||||||| | ||||||| ||||||| |||||||||||||| Sbjct 829745 TAGAAATTGCTAGTGTATGGCTCAATGGACTCATTATTACCCAGAATTTGGGCTGTGGAA 829804 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACC 116003 || |||||||| ||||| | ||||| ||||| |||| ||| Sbjct 829805 GCGGTGGGCATCGGTGCAAGCAGAAGACTGTTACGGATACC 829845 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 116519 ||||||||| || ||||| | ||| || ||||||||||| | ||||||||||| Sbjct 830770 CTCATCCTTGCTTGTATACTCCACAATCTCTGTACACAAATTGCTGCATTTAATGGTGCC 830829 Query 116520 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCC 116579 | ||||| || || ||| | || || ||||| ||||| ||||| || || || || Sbjct 830830 GAGGTTCTGCTGGTTGCTCTTCCTATTGCAGGCATCTTTGTAAAGCATGTAGGGAGTGCC 830889 Query 116580 CGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATAC 116615 ||||| || || |||| | |||||| | ||| || Sbjct 830890 AGTCTCAGTCTGAGACTCAATAATAGCATACCACAC 830925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613424875002600