Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq10555 152 1e-31
seq183 138 3e-27
>seq10555
Length=3328687
Score = 152 bits (168), Expect = 1e-31
Identities = 159/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| |||||||| || |||||||| |||| ||||||||| | || || | ||| |||
Sbjct 3318432 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCT 3318491
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || |||||||| |||||||||||||| || ||||| || ||
Sbjct 3318492 TCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCT 3318551
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| || ||| |||| |||||| ||| || || ||||| ||||| |||
Sbjct 3318552 TGGATCTTGGCTTTGACGTTCTCGATGGTGTCGCTTGGCTCCACCTCCAAGGTGATGGTC 3318611
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || || |||||||| || ||
Sbjct 3318612 TTACCAGTCAGCGTCTTCACAAAGATCTG 3318640
Score = 141 bits (156), Expect = 2e-28
Identities = 162/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | |||||| || ||||| || |||||||| |||| ||||||||| | || ||
Sbjct 3315217 CGGAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 3315276
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||||||||||| || || ||||| |||||||||||||| || |||||
Sbjct 3315277 CGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGGATTCCC 3315336
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| || || |||||| ||| | |||||| ||| || || || |
Sbjct 3315337 TCCTTATCCTGGATTTTAGCCTTCACATTTTCAATGGTGTCACTTGGCTCCACTTCGAGA 3315396
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| |||||||| || || || ||||| || || ||
Sbjct 3315397 GTGATGGTCTTACCAGTCAGCGTCTTCACGAAGATCTG 3315434
Score = 138 bits (152), Expect = 3e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| || ||||| || |||||||| |||| ||||||||| | || || | |||||||
Sbjct 3315682 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 3315741
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || |||||||| | |||||||||||| ||| ||| ||||| |||
Sbjct 3315742 TCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCC 3315801
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| || ||| || | |||||| ||| || || || | ||||| |||
Sbjct 3315802 TGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTC 3315861
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || ||||| || || ||
Sbjct 3315862 TTGCCAGTCAGCGTCTTCACGAAGATCTG 3315890
Score = 134 bits (148), Expect = 3e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|||||||||||||| || |||||| |||| ||||||||| | | ||| | ||||||
Sbjct 3315454 AGGACAAGGTGGAGGGTACTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCATCT 3315513
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| ||||| ||||| |||||||||||||| || ||||| || ||
Sbjct 3315514 TCAAGCTGCTTACCGGCAAAGATCAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTATCT 3315573
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| || ||| || | ||||| | | ||| || ||||| ||||| |||
Sbjct 3315574 TGGATCTTGGCTTTGACGTTCTCAATAGTGTCGCTGGGTTCCACCTCCAAGGTGATGGTC 3315633
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || ||||| || ||
Sbjct 3315634 TTACCAGTGAGGGTCTTGACAAAGATCTG 3315662
>seq183
Length=784777
Score = 138 bits (152), Expect = 3e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|||||||| |||||||| ||||| || |||| |||||||| | ||| || | |||||||
Sbjct 332101 AGGACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAGTCGGACAAGGTGCGTCCATCT 332160
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || |||||||| | | ||||||||| || ||| |||||| |||
Sbjct 332161 TCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 332220
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| || || || | ||||| ||| || || || | ||||| |||
Sbjct 332221 TGGATCTTGGCTTTGACATTCTCAATTGTGTCACTTGGCTCAACCTCAAGGGTGATGGTC 332280
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| || |||||||| |||||
Sbjct 332281 TTGCCAGTGAGGGTCTTCACAAAGATTTG 332309
Score = 116 bits (128), Expect = 9e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|||||||| || || || || || || |||| ||||||||| | || || | ||||||
Sbjct 331873 AGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 331932
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||||||| || ||||| ||||| | | |||||| || || ||| |||||| |||
Sbjct 331933 TCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCC 331992
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||||||| || | |||||| ||| || || || | ||||| |||
Sbjct 331993 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGGTC 332052
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || ||||| || || ||
Sbjct 332053 TTGCCAGTCAGGGTCTTCACGAAGATCTG 332081
Score = 96.9 bits (106), Expect = 8e-15
Identities = 150/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||| || ||||||||||| |||||||| |||| ||||||||||| || || | |||||
Sbjct 331640 CAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 331699
Query 199477 TTCCAGCTGCTTTCCGGCGAAGAT----GAGACGCTGCTGGTCCGGAAAAATTCCTTCTC 199532
||||||||| || ||||| ||||| | | |||||| || || ||| || |||
Sbjct 331700 TTCCAGCTGTTTGCCGGCAAAGATCAACCAACCTCTGCTGATCTGGGGGAATGCCCTCTT 331759
Query 199533 GCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592
|| || ||||| || || || | |||||| ||| || || || | ||||
Sbjct 331760 TGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGA 331819
Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
| ||||| || || || || || || || || ||
Sbjct 331820 TGGTCTTGCCGGTCAGGGTCTTTACGAAGATCTG 331853
Score = 86.0 bits (94), Expect = 1e-11
Identities = 67/80 (84%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997
|||||||| || |||||| ||||||||||| | || ||| |||| ||||| ||||||||
Sbjct 332183 ATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCTTGTCCGACTACAATATCCAGAAA 332124
Query 200998 GAGTCTACTCTTCACCTTGT 201017
||||| ||||| || |||||
Sbjct 332123 GAGTCCACTCTCCATCTTGT 332104
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178759448544245
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |