Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq183 140 3e-28 seq10555 136 4e-27 >seq183 Length=784777 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| |||| || ||| | | | Sbjct 332084 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCAAGC 332025 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| |||||||| || |||||| | || || Sbjct 332024 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGATCA 331966 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || |||||||||||||| || | ||||||||| ||||||||| Sbjct 331965 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 331906 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || ||| | || |||||| | || || ||| | || || ||| Sbjct 331905 CATCCAGAAAGAATCCACCCTGCATCTTGTCCTTCGTCTCAGGGGAGGC 331857 Score = 136 bits (150), Expect = 4e-27 Identities = 169/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || |||||||| || || || ||||| ||||||||| | || || ||| | | | Sbjct 331856 ATGCAGATCTTCGTAAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 331797 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| || |||| ||||||||||| |||||| | || || Sbjct 331796 GACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATTCCCCCAGATCAG 331737 Query 38364 CAGCGGCTCATTTAC----GCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| || | || | || |||||||||||||| || | ||||||||| ||||| Sbjct 331736 CAGAGGTTGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTA 331677 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| | || || || ||||||||||| | || ||||| Sbjct 331676 CAACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGTCTCAGGGGCGG 331626 >seq10555 Length=3328687 Score = 136 bits (150), Expect = 4e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || ||||| || || || ||||||||| | || || ||| | Sbjct 3318647 AAAGATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATCACCTTGGAGGTGGAGCC 3318588 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | ||||| | | | |||| | |||| || |||| || || |||||||| || ||| Sbjct 3318587 AAGCGACACCATCGAGAACG-TCAAAGCCAAGATCCAAGATAAGGAGGGAATCCCACCCG 3318529 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| || || | ||| || || |||||||| |||| |||||||| ||||| Sbjct 3318528 ACCAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAAGACGGACGCACCCTGTCCGACT 3318469 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||| ||||| | || || || |||| || ||| |||| || || Sbjct 3318468 ACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTTCGTCTGAGGGGAGG 3318417 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || || || |||||||| |||| || ||| | | Sbjct 3315437 ATGCAGATCTTCGTGAAGACGCTGACTGGTAAGACCATCACTCTCGAAGTGGAGCCAAGT 3315378 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | ||||||| || || |||||||| || ||||||| Sbjct 3315377 GACACCATTGAAAATGTGAAGGCTAAAATCCAGGATAAGGAGGGAATCCCACCCGACCAG 3315318 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || |||||||| || | |||||||| |||||||||| Sbjct 3315317 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 3315258 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || || ||| | || |||||| | | |||||| Sbjct 3315257 ATCCAGAAGGAGTCCACCCTCCATCTCGTCCTGCGTCTCCGTGGCGGC 3315210 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| |||||||| |||| || ||| | | Sbjct 3315893 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTCGAAGTGGAGCCAAGT 3315834 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| || |||| || || || || ||||| ||||||| Sbjct 3315833 GACACCATTGAGAACG-TCAAAGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCA 3315775 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| || || |||||||| || | |||||||| ||||||||| Sbjct 3315774 GCAGCGTTTGATCTTCGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAA 3315715 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || ||| | || || ||| |||| || || Sbjct 3315714 CATCCAGAAGGAGTCCACCCTCCATCTCGTCCTCCGTCTGAGGGGAGG 3315667 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || || ||||||||| | || || || ||| | Sbjct 3315665 ATGCAGATCTTTGTCAAGACCCTCACTGGTAAGACCATCACCTTGGAGGTGGAACCCAGC 3315606 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| || |||| || || |||||||| || | ||||| Sbjct 3315605 GACACTATTGAGAACG-TCAAAGCCAAGATCCAAGATAAGGAGGGAATCCCACCTGACCA 3315547 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || ||||| || || | || || ||| ||||||||| Sbjct 3315546 GCAGCGTCTGATCTTTGCCGGTAAGCAGCTTGAAGATGGTCGTACTCTCTCCGACTACAA 3315487 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| || || || | || || ||| |||| || || Sbjct 3315486 CATCCAGAAGGAGAGTACCCTCCACCTTGTCCTCCGTCTGAGGGGAGG 3315439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500105683062400