Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq10555 93.3 2e-13 seq10722 91.5 6e-13 seq592 86.0 2e-11 >seq10555 Length=3328687 Score = 93.3 bits (102), Expect = 2e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || ||||| || || || || | Sbjct 3315893 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTCGAAGTGGAGCCAAGT 3315834 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | ||| || || || ||||||||||| |||||||| || || Sbjct 3315833 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCAG 3315774 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| || ||| | || || || || ||||||||| | || || | || || || Sbjct 3315773 CAGCGTTTGATCTTCGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 3315714 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 3315713 ATCCAGAAGGA 3315703 Score = 87.8 bits (96), Expect = 7e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||||||||| || || ||||| || || || || | Sbjct 3315437 ATGCAGATCTTCGTGAAGACGCTGACTGGTAAGACCATCACTCTCGAAGTGGAGCCAAGT 3315378 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||||| | | || ||||| || |||||||| ||||| || || || || Sbjct 3315377 GACACCATTGAAAATGTGAAGGCTAAAATCCAGGATAAGGAGGGAATCCCACCCGACCAG 3315318 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | || || || || ||||||||| | || || | || || || Sbjct 3315317 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 3315258 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 3315257 ATCCAGAAGGA 3315247 >seq10722 Length=1616126 Score = 91.5 bits (100), Expect = 6e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 ||||||| ||||||| || || || || ||||| | || || || || || || |||| Sbjct 764317 ATGCAGTGGTTACTGTACCTGCGTACTTTAATGACTCTCAGCGTCAGGCTACAAAGGATG 764376 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 |||| ||| |||| ||||||| |||||||| || ||||| || ||||||||||| Sbjct 764377 CAGGGACCATTTCTGGACTAAATGTCCTTCGAATCATCAATGAGCCAACAGCAGCTGCCA 764436 Query 451440 TAGCATATGGACT 451452 |||| || || || Sbjct 764437 TAGCCTACGGCCT 764449 >seq592 Length=234143 Score = 86.0 bits (94), Expect = 2e-11 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 ||||||| || || || || || || ||||| || | || ||||||| || ||||| | Sbjct 14529 ATGCAGTCATCACAGTACCTGCCTACTTCAACGACTCTCAGAGGCAAGCCACCAAAGACG 14588 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || ||||||||| | ||||| || || ||||||||||| || |||||||| || Sbjct 14589 CTGGTACTATTGCTGGCCTGAATGTCCTCCGCATTATTAATGAGCCAACAGCAGCGGCCA 14648 Query 451440 TAGCATATGG 451449 | || ||||| Sbjct 14649 TCGCCTATGG 14658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975446655369380