Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq167 251 5e-61
seq228 131 1e-24
seq10671 107 1e-17
seq592 93.3 3e-13
>seq167
Length=797236
Score = 251 bits (278), Expect = 5e-61
Identities = 943/1463 (64%), Gaps = 22/1463 (2%)
Strand=Plus/Plus
Query 517258 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 517317
||||| || || || || || ||||| || | ||| || ||||| || || ||||| ||
Sbjct 617843 GGCAGAAACGTTCAGGATGCCGTTGGCGTCGATATCGAAGGTGACCTCGATCTGAGGTAC 617902
Query 517318 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 517377
|| | | ||||| || || ||| | | ||| | || || || || |||||
Sbjct 617903 ACCCCGTGGTGCAGGGGGAATACCTGTGAGTTCAAACTTGCCGAGGAGGTTGTTGTCTTT 617962
Query 517378 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 517437
|| | ||| || || ||| | | |||||| ||| | | || || || || ||
Sbjct 617963 GGTCATGGCTCGCTCCCCTTCGTAGACTTGGATCAGCACTCCTGGCTGGTTGTCGGAGTA 618022
Query 517438 AGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 517496
||| | || | |||| | | ||| || || || || || | | || | ||
Sbjct 618023 AGTGGAGAAAA-TCTGCGTCTGTTTGTTGGGGATGGTGGTATTGCGCTTGATGAGGGCGG 618081
Query 517497 TCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA-CA 517555
|||||| || || || || || | ||| || || || || | ||||| | |||| ||
Sbjct 618082 TCATAACTCCTCCGGCGGTCTCAATACCCAGTGACAGCGGTGCCACATCCAGCAGGAGCA 618141
Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615
| | || ||||| | | || | ||| | ||||| || || || | || || ||
Sbjct 618142 AGTCCTGGACGTTTTCCGAC-GTGTCACCCATGAGAATGGCGGCCTGCACTGCCGCGCCG 618200
Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675
|| || || ||||| || ||||| | | | || || | | ||||| || || | |
Sbjct 618201 TAAGCCACTGCTTCGTCTGGATTGATGCTCTTGTTGAGGTCCCTGCCATTAAAGAATTCT 618260
Query 517676 GAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734
||||||| ||| | ||| || || | | || || ||||| || ||||| || ||
Sbjct 618261 TGCAGAAGTT-TCTGGATCTTGGGGATTCTTGTGGAGCCACCAACCAACACAATATCGTG 618319
Query 517735 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGC 517794
| ||| || ||||||| ||| | || ||| | || || || |||||||| |
Sbjct 618320 AATCTGGGACTTATCCATTTTGGCGTCTCTCAAAGCCTTCTCCACCGGTTCAAGGGTGCC 618379
Query 517795 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATC 517854
|||||| | || || ||| || || || |||||| || | | | | ||||
Sbjct 618380 TCTAAAAAGCTCAGAGTTAAGCTCCTCAAAGCGAGCTCTGGTGATGGAGGTGTAGAAATC 618439
Query 517855 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 517914
| || || ||| || || | ||||| | | |||| || || || | |
Sbjct 618440 TACACCCTCATACAGGGAGTCGATCTCAATGCTGGCCTGAGAGCTGGAGGACAGGGTTCT 618499
Query 517915 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTTGCTGATTGATTCA 517970
|| || | || || |||||||| | || || | ||| || | |||| ||||
Sbjct 618500 CTTGGCTCTCTCGCAGGCTGTCCTCAACCTCCGGACGGCCCTCTTGTTCTGAGTGATG-- 618557
Query 517971 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATC 518028
||| | || | || |||||||| || || ||| | |||| || | ||||| ||
Sbjct 618558 --TCTTTCTTGTGCTTCCTCTTGAACTCCTCCACAAAG--TGTTGGACCATGCGATTGTC 618613
Query 518029 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 518088
||| ||||| || ||||| | ||| | ||| | || ||| | || | || | |||||
Sbjct 618614 AAAGTCTTCCCCACCCAAGTGAGTGTCTCCAGCTGTGGCTTTCACCTCAAAGATGCCATC 618673
Query 518089 TTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 518148
|| | | || | || |||||| ||| || || |||| ||||| || || |||||
Sbjct 618674 CTCGATGGTCAGGATAGAAACATCAAAGGTGCCTCCTCCCAAGTCAAAGATCAGGACATT 618733
Query 518149 CATTTCTT-TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 518207
| | || | ||||| || || ||||| || |||| || || || || || ||||
Sbjct 618734 CCTCTCGCCTCTCTTGCCCTTG-TCCAGACCGTAGGCAATGGCGGCTGCTGTGGGCTCAT 618792
Query 518208 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 518267
| || ||||||| ||||| || |||||||| ||| |||||||| || || || || |
Sbjct 618793 TGATGATTCTCAGCACATTCAGTCCAGCAATCACTCCAGCATCTTTGGTCGCCTGCCTCT 618852
Query 518268 GTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT-TCTTTACCAATA 518326
| || ||||| || || || || || || || ||||||| || ||| ||| |||| |
Sbjct 618853 GGGAGTCGTTGAAGTAAGCCGGGACTGTGATTACGGCATTGGTGACTCTCTGGCCCAA-A 618911
Query 518327 TAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAA 518386
|| || | | | ||||||| | | ||| || || || | || ||| ||
Sbjct 618912 TAGGCTTCAGAAATCTCCCTCATTTTCACAAGGACCATAGACGAGATCTCCTCAGGGTAA 618971
Query 518387 TATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATA 518446
| ||| || | || || || | | || || ||| || | ||
Sbjct 618972 AAGGTCTTCACCTCCCCCTTGTACTCCACCTCCACTTTCGGCTTGCCTCCATCACTGATC 619031
Query 518447 ACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 518506
|||||||| |||||| |||||| ||||| ||||| ||||| ||| ||| |||
Sbjct 619032 ACTTTAAAGGGCCAGAGTTTCATGTCTGACTGAACCACAGCGTCATCAAACCTTCTGCCA 619091
Query 518507 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCT 518566
|| | || |||||||||||||| || ||| | ||||| || || | || | ||||||
Sbjct 619092 ATCAGACGCTTTGCATCAAAAATGGTGTTGTTGGGATTCATGGCGACCTGGTTTTTGGCA 619151
Query 518567 GCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 518626
|||||||| || || || || |||||||| | ||||| |||||||| | ||
Sbjct 619152 GCATCTCCGATGAGCCTCTCAGTGTCTGTAAACGCCACATAGCTGGGAGTTGTCCTGTTT 619211
Query 518627 CCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAA 518686
|||||||| || ||||| ||||||||||| |||| || | ||||| ||||| |
Sbjct 619212 CCTTGATCGTTGGCAATGATTTCAACTTTGCCATGCTGGAAAACACCCACACAGGAGTAG 619271
Query 518687 GTTGTTCCTAAATCAATACCAAT 518709
|| ||||| | ||||| |||||
Sbjct 619272 GTAGTTCCAAGGTCAATTCCAAT 619294
>seq228
Length=588457
Score = 131 bits (144), Expect = 1e-24
Identities = 323/485 (67%), Gaps = 4/485 (1%)
Strand=Plus/Plus
Query 518232 CAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAA 518291
||||||| ||| |||||||| ||||| || || || || ||||| || || ||||| |
Sbjct 46996 CAGCAATCACTCCAGCATCTTTGGTGGCCTGCCTCTGAGAGTCGTTGAAGTAGGCAGGTA 47055
Query 518292 CAGTAATAACGGCATCAGTTAC-TTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATT 518350
||||||||||||||| || || |||| | ||| ||| || ||| ||| || |||
Sbjct 47056 CAGTAATAACGGCATTTGTCACCTTCTGTCCCAG-ATAGGCCTCTGCAATTTCTTACATC 47114
Query 518351 TTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATT-TTGATA 518409
|| | || ||| || ||||| | ||| ||| || | ||| || |||
Sbjct 47115 TTCACCAGAACCATGGAGGAAATATCTTCAGGGTAAAAGGTCTTCTGCTCTCCCTTGTGC 47174
Query 518410 TGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATTTCAT 518469
| | |||| || | ||| || ||| | | | |||| | ||||||| |||||
Sbjct 47175 TCA-ACTTGAACCTTTGGCTTTCCTCCATCGCTGACCACTTGGGAGGGCCAGTGCTTCAT 47233
Query 518470 ATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAAT 518529
||| || ||||| | || | ||| | | || || | | || || ||||| |
Sbjct 47234 ATCGGACTGAACGACAGGATCGTCAAACTTGCGGCCGATCAGCCTCTTGGCGTCAAACAC 47293
Query 518530 AGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGT 518589
||| ||| | || || || || |||| | ||| || |||||||||||||| |||||
Sbjct 47294 AGTGTTGTTGGGGTTCATGGCCACTTGGTTTTTTGCAGCATCTCCAATCAGCCTCTCTGT 47353
Query 518590 CTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTC 518649
||||| || | ||||| || || || | || || || || || ||||| || ||
Sbjct 47354 GTCTGTGAAAGCCACATAGCTGGGGGTGGTTCTGTTTCCCTGGTCGTTAGCAATGATCTC 47413
Query 518650 AACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAAT 518709
||||| |||| || | || ||||||||| | || || || | ||||| |||||
Sbjct 47414 CACTTTTCCATGCTGGAACACTCCTACACAAGAGTAGGTCGTGCCCAGGTCAATGCCAAT 47473
Query 518710 AGCAA 518714
|||||
Sbjct 47474 AGCAA 47478
>seq10671
Length=1829250
Score = 107 bits (118), Expect = 1e-17
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 518520 CATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCA 518579
|| |||| || || |||||||| || ||||| |||| | ||||||||||| |||||||
Sbjct 1513958 CACCAAAGATTGTGTTGGTTGGGTTCATTGCCACTTGGTTCTTGGCTGCATCACCAATCA 1513899
Query 518580 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 518639
| ||| || ||||| || | ||||| ||| || || | || ||||| || || |
Sbjct 1513898 GTCTTTCGGTATCTGTGAAGGCCACATAGCTTGGCGTGGTCCTGTTTCCTTGGTCGTTGG 1513839
Query 518640 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAAT 518699
|||||||||||||||| |||| || | | || ||||| | || ||||| | ||
Sbjct 1513838 CAATAATTTCAACTTTGCCATGCTGGAAGATTCCCACACATGAGTATGTGGTTCCCAGAT 1513779
Query 518700 CAATACCAATAGCAATT 518716
|||| || | |||| ||
Sbjct 1513778 CAATGCCTACAGCAGTT 1513762
Score = 104 bits (114), Expect = 2e-16
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
||||| || ||||| || |||| |||||||||||||| ||||| || || | || ||||
Sbjct 1496628 TTTTTGTCCAGACCGTAAGCAATTGCAGCAGCAGTTGGCTCATTGATGATACGCAGAACA 1496687
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| || |||| || |||| ||||| ||||| || || | || |||||||| || ||
Sbjct 1496688 TTCAGGCCAGAGATGGTTCCAGCATCCTTAGTAGCCTGACGCTGGGAATCGTTGAAGTAG 1496747
Query 518285 GCAGGAACAGTAATAACGGCAT 518306
||||| || || || || ||||
Sbjct 1496748 GCAGGCACTGTGATCACAGCAT 1496769
Score = 104 bits (114), Expect = 2e-16
Identities = 137/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582
||||||| || ||||| || || || ||| | || | ||||||||||| ||||||||
Sbjct 1497336 CAAAAATTGTGTTGGTAGGGTTCATAGCAACCTGGTTCTTGGCTGCATCACCAATCAGTC 1497395
Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642
||| || ||||| || | ||||| ||| || || | || ||||| || || ||||
Sbjct 1497396 TTTCGGTATCTGTGAAGGCCACATAGCTTGGCGTGGTCCTGTTTCCTTGGTCGTTGGCAA 1497455
Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702
||||||||||||| |||| || | || || ||||| | || || || | |||||
Sbjct 1497456 TAATTTCAACTTTGCCATGCTGGAAGACTCCAACACAGGAGTATGTGGTCCCCAGATCAA 1497515
Query 518703 TACCAATAGC 518712
|||| | |||
Sbjct 1497516 TACCGACAGC 1497525
>seq592
Length=234143
Score = 93.3 bits (102), Expect = 3e-13
Identities = 110/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
||||| || | ||||| || | || || || ||||| ||||||||||| | | |||
Sbjct 14670 TTTTTGTCCAACCCATAGGCGATGGCCGCTGCTGTTGGCTCATTAATAATGCGGAGGACA 14611
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| || |||||||| | || || ||||| |||||||| || || || ||||| || ||
Sbjct 14610 TTCAGGCCAGCAATAGTACCAGCGTCTTTGGTGGCTTGCCTCTGAGAGTCGTTGAAGTAG 14551
Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313
||||| || || || || |||| |||||
Sbjct 14550 GCAGGTACTGTGATGACTGCATTTGTTAC 14522
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780289693938910
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