Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq167 251 5e-61 seq228 131 1e-24 seq10671 107 1e-17 seq592 93.3 3e-13 >seq167 Length=797236 Score = 251 bits (278), Expect = 5e-61 Identities = 943/1463 (64%), Gaps = 22/1463 (2%) Strand=Plus/Plus Query 517258 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 517317 ||||| || || || || || ||||| || | ||| || ||||| || || ||||| || Sbjct 617843 GGCAGAAACGTTCAGGATGCCGTTGGCGTCGATATCGAAGGTGACCTCGATCTGAGGTAC 617902 Query 517318 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 517377 || | | ||||| || || ||| | | ||| | || || || || ||||| Sbjct 617903 ACCCCGTGGTGCAGGGGGAATACCTGTGAGTTCAAACTTGCCGAGGAGGTTGTTGTCTTT 617962 Query 517378 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 517437 || | ||| || || ||| | | |||||| ||| | | || || || || || Sbjct 617963 GGTCATGGCTCGCTCCCCTTCGTAGACTTGGATCAGCACTCCTGGCTGGTTGTCGGAGTA 618022 Query 517438 AGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 517496 ||| | || | |||| | | ||| || || || || || | | || | || Sbjct 618023 AGTGGAGAAAA-TCTGCGTCTGTTTGTTGGGGATGGTGGTATTGCGCTTGATGAGGGCGG 618081 Query 517497 TCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA-CA 517555 |||||| || || || || || | ||| || || || || | ||||| | |||| || Sbjct 618082 TCATAACTCCTCCGGCGGTCTCAATACCCAGTGACAGCGGTGCCACATCCAGCAGGAGCA 618141 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | | || ||||| | | || | ||| | ||||| || || || | || || || Sbjct 618142 AGTCCTGGACGTTTTCCGAC-GTGTCACCCATGAGAATGGCGGCCTGCACTGCCGCGCCG 618200 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675 || || || ||||| || ||||| | | | || || | | ||||| || || | | Sbjct 618201 TAAGCCACTGCTTCGTCTGGATTGATGCTCTTGTTGAGGTCCCTGCCATTAAAGAATTCT 618260 Query 517676 GAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734 ||||||| ||| | ||| || || | | || || ||||| || ||||| || || Sbjct 618261 TGCAGAAGTT-TCTGGATCTTGGGGATTCTTGTGGAGCCACCAACCAACACAATATCGTG 618319 Query 517735 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGC 517794 | ||| || ||||||| ||| | || ||| | || || || |||||||| | Sbjct 618320 AATCTGGGACTTATCCATTTTGGCGTCTCTCAAAGCCTTCTCCACCGGTTCAAGGGTGCC 618379 Query 517795 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATC 517854 |||||| | || || ||| || || || |||||| || | | | | |||| Sbjct 618380 TCTAAAAAGCTCAGAGTTAAGCTCCTCAAAGCGAGCTCTGGTGATGGAGGTGTAGAAATC 618439 Query 517855 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 517914 | || || ||| || || | ||||| | | |||| || || || | | Sbjct 618440 TACACCCTCATACAGGGAGTCGATCTCAATGCTGGCCTGAGAGCTGGAGGACAGGGTTCT 618499 Query 517915 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTTGCTGATTGATTCA 517970 || || | || || |||||||| | || || | ||| || | |||| |||| Sbjct 618500 CTTGGCTCTCTCGCAGGCTGTCCTCAACCTCCGGACGGCCCTCTTGTTCTGAGTGATG-- 618557 Query 517971 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATC 518028 ||| | || | || |||||||| || || ||| | |||| || | ||||| || Sbjct 618558 --TCTTTCTTGTGCTTCCTCTTGAACTCCTCCACAAAG--TGTTGGACCATGCGATTGTC 618613 Query 518029 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 518088 ||| ||||| || ||||| | ||| | ||| | || ||| | || | || | ||||| Sbjct 618614 AAAGTCTTCCCCACCCAAGTGAGTGTCTCCAGCTGTGGCTTTCACCTCAAAGATGCCATC 618673 Query 518089 TTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 518148 || | | || | || |||||| ||| || || |||| ||||| || || ||||| Sbjct 618674 CTCGATGGTCAGGATAGAAACATCAAAGGTGCCTCCTCCCAAGTCAAAGATCAGGACATT 618733 Query 518149 CATTTCTT-TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 518207 | | || | ||||| || || ||||| || |||| || || || || || |||| Sbjct 618734 CCTCTCGCCTCTCTTGCCCTTG-TCCAGACCGTAGGCAATGGCGGCTGCTGTGGGCTCAT 618792 Query 518208 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 518267 | || ||||||| ||||| || |||||||| ||| |||||||| || || || || | Sbjct 618793 TGATGATTCTCAGCACATTCAGTCCAGCAATCACTCCAGCATCTTTGGTCGCCTGCCTCT 618852 Query 518268 GTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT-TCTTTACCAATA 518326 | || ||||| || || || || || || || ||||||| || ||| ||| |||| | Sbjct 618853 GGGAGTCGTTGAAGTAAGCCGGGACTGTGATTACGGCATTGGTGACTCTCTGGCCCAA-A 618911 Query 518327 TAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAA 518386 || || | | | ||||||| | | ||| || || || | || ||| || Sbjct 618912 TAGGCTTCAGAAATCTCCCTCATTTTCACAAGGACCATAGACGAGATCTCCTCAGGGTAA 618971 Query 518387 TATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATA 518446 | ||| || | || || || | | || || ||| || | || Sbjct 618972 AAGGTCTTCACCTCCCCCTTGTACTCCACCTCCACTTTCGGCTTGCCTCCATCACTGATC 619031 Query 518447 ACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 518506 |||||||| |||||| |||||| ||||| ||||| ||||| ||| ||| ||| Sbjct 619032 ACTTTAAAGGGCCAGAGTTTCATGTCTGACTGAACCACAGCGTCATCAAACCTTCTGCCA 619091 Query 518507 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCT 518566 || | || |||||||||||||| || ||| | ||||| || || | || | |||||| Sbjct 619092 ATCAGACGCTTTGCATCAAAAATGGTGTTGTTGGGATTCATGGCGACCTGGTTTTTGGCA 619151 Query 518567 GCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 518626 |||||||| || || || || |||||||| | ||||| |||||||| | || Sbjct 619152 GCATCTCCGATGAGCCTCTCAGTGTCTGTAAACGCCACATAGCTGGGAGTTGTCCTGTTT 619211 Query 518627 CCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAA 518686 |||||||| || ||||| ||||||||||| |||| || | ||||| ||||| | Sbjct 619212 CCTTGATCGTTGGCAATGATTTCAACTTTGCCATGCTGGAAAACACCCACACAGGAGTAG 619271 Query 518687 GTTGTTCCTAAATCAATACCAAT 518709 || ||||| | ||||| ||||| Sbjct 619272 GTAGTTCCAAGGTCAATTCCAAT 619294 >seq228 Length=588457 Score = 131 bits (144), Expect = 1e-24 Identities = 323/485 (67%), Gaps = 4/485 (1%) Strand=Plus/Plus Query 518232 CAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAA 518291 ||||||| ||| |||||||| ||||| || || || || ||||| || || ||||| | Sbjct 46996 CAGCAATCACTCCAGCATCTTTGGTGGCCTGCCTCTGAGAGTCGTTGAAGTAGGCAGGTA 47055 Query 518292 CAGTAATAACGGCATCAGTTAC-TTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATT 518350 ||||||||||||||| || || |||| | ||| ||| || ||| ||| || ||| Sbjct 47056 CAGTAATAACGGCATTTGTCACCTTCTGTCCCAG-ATAGGCCTCTGCAATTTCTTACATC 47114 Query 518351 TTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATT-TTGATA 518409 || | || ||| || ||||| | ||| ||| || | ||| || ||| Sbjct 47115 TTCACCAGAACCATGGAGGAAATATCTTCAGGGTAAAAGGTCTTCTGCTCTCCCTTGTGC 47174 Query 518410 TGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATTTCAT 518469 | | |||| || | ||| || ||| | | | |||| | ||||||| ||||| Sbjct 47175 TCA-ACTTGAACCTTTGGCTTTCCTCCATCGCTGACCACTTGGGAGGGCCAGTGCTTCAT 47233 Query 518470 ATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAAT 518529 ||| || ||||| | || | ||| | | || || | | || || ||||| | Sbjct 47234 ATCGGACTGAACGACAGGATCGTCAAACTTGCGGCCGATCAGCCTCTTGGCGTCAAACAC 47293 Query 518530 AGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGT 518589 ||| ||| | || || || || |||| | ||| || |||||||||||||| ||||| Sbjct 47294 AGTGTTGTTGGGGTTCATGGCCACTTGGTTTTTTGCAGCATCTCCAATCAGCCTCTCTGT 47353 Query 518590 CTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTC 518649 ||||| || | ||||| || || || | || || || || || ||||| || || Sbjct 47354 GTCTGTGAAAGCCACATAGCTGGGGGTGGTTCTGTTTCCCTGGTCGTTAGCAATGATCTC 47413 Query 518650 AACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAAT 518709 ||||| |||| || | || ||||||||| | || || || | ||||| ||||| Sbjct 47414 CACTTTTCCATGCTGGAACACTCCTACACAAGAGTAGGTCGTGCCCAGGTCAATGCCAAT 47473 Query 518710 AGCAA 518714 ||||| Sbjct 47474 AGCAA 47478 >seq10671 Length=1829250 Score = 107 bits (118), Expect = 1e-17 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 518520 CATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCA 518579 || |||| || || |||||||| || ||||| |||| | ||||||||||| ||||||| Sbjct 1513958 CACCAAAGATTGTGTTGGTTGGGTTCATTGCCACTTGGTTCTTGGCTGCATCACCAATCA 1513899 Query 518580 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 518639 | ||| || ||||| || | ||||| ||| || || | || ||||| || || | Sbjct 1513898 GTCTTTCGGTATCTGTGAAGGCCACATAGCTTGGCGTGGTCCTGTTTCCTTGGTCGTTGG 1513839 Query 518640 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAAT 518699 |||||||||||||||| |||| || | | || ||||| | || ||||| | || Sbjct 1513838 CAATAATTTCAACTTTGCCATGCTGGAAGATTCCCACACATGAGTATGTGGTTCCCAGAT 1513779 Query 518700 CAATACCAATAGCAATT 518716 |||| || | |||| || Sbjct 1513778 CAATGCCTACAGCAGTT 1513762 Score = 104 bits (114), Expect = 2e-16 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || ||||| || |||| |||||||||||||| ||||| || || | || |||| Sbjct 1496628 TTTTTGTCCAGACCGTAAGCAATTGCAGCAGCAGTTGGCTCATTGATGATACGCAGAACA 1496687 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||| || |||| ||||| ||||| || || | || |||||||| || || Sbjct 1496688 TTCAGGCCAGAGATGGTTCCAGCATCCTTAGTAGCCTGACGCTGGGAATCGTTGAAGTAG 1496747 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||| || || || || |||| Sbjct 1496748 GCAGGCACTGTGATCACAGCAT 1496769 Score = 104 bits (114), Expect = 2e-16 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 ||||||| || ||||| || || || ||| | || | ||||||||||| |||||||| Sbjct 1497336 CAAAAATTGTGTTGGTAGGGTTCATAGCAACCTGGTTCTTGGCTGCATCACCAATCAGTC 1497395 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||| || ||||| || | ||||| ||| || || | || ||||| || || |||| Sbjct 1497396 TTTCGGTATCTGTGAAGGCCACATAGCTTGGCGTGGTCCTGTTTCCTTGGTCGTTGGCAA 1497455 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 ||||||||||||| |||| || | || || ||||| | || || || | ||||| Sbjct 1497456 TAATTTCAACTTTGCCATGCTGGAAGACTCCAACACAGGAGTATGTGGTCCCCAGATCAA 1497515 Query 518703 TACCAATAGC 518712 |||| | ||| Sbjct 1497516 TACCGACAGC 1497525 >seq592 Length=234143 Score = 93.3 bits (102), Expect = 3e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| || | || || || ||||| ||||||||||| | | ||| Sbjct 14670 TTTTTGTCCAACCCATAGGCGATGGCCGCTGCTGTTGGCTCATTAATAATGCGGAGGACA 14611 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||||||| | || || ||||| |||||||| || || || ||||| || || Sbjct 14610 TTCAGGCCAGCAATAGTACCAGCGTCTTTGGTGGCTTGCCTCTGAGAGTCGTTGAAGTAG 14551 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 ||||| || || || || |||| ||||| Sbjct 14550 GCAGGTACTGTGATGACTGCATTTGTTAC 14522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780289693938910