Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq167 340 2e-88 seq10671 178 2e-39 seq592 156 5e-33 seq10722 149 8e-31 >seq167 Length=797236 Score = 340 bits (376), Expect = 2e-88 Identities = 1029/1571 (65%), Gaps = 24/1571 (2%) Strand=Plus/Plus Query 6584 TACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCA 6643 ||||| ||||| ||||| ||||| | || || |||||||| ||| | ||||| || Sbjct 617739 TACTTGTCCGCCTCTTGTACCATTCTCTCGATCTCTTCTTTGCTTAAACGACCCTTGTCG 617798 Query 6644 TTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAA 6703 || || || || ||||| | || || | | ||| ||| ||| || |||| Sbjct 617799 TTGGTGATGGTGATCTTGTTCTCCTTGCCGGTGCTCTTGTCTATGGCAGAAACGTTCAGG 617858 Query 6704 ATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCT 6763 || || || || || | |||||| | || | || || ||| ||||| ||||| | Sbjct 617859 ATGCCGTTGGCGTCGATATCGAAGGTGACCTCGATCTGAGGTACACCCCGTGGTGCAGGG 617918 Query 6764 GGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCA 6823 |||||||| || | ||||| | || || | |||| || | | | | || || Sbjct 617919 GGAATACCTGTGAGTTCAAACTTGCCGAGGAGGTTGTTGTCTTTGGTCATGGCTCGCTCC 617978 Query 6824 CCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGT 6883 ||||| ||||||| || ||| | || || || || || ||||| || || Sbjct 617979 CCTTCGTAGACTTGGATCAGCACTCCTGGCTGGTTGTCGGAGTAAGTGGAGAAAATCTGC 618038 Query 6884 TCTTTCTTAGATGGA-ATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCAT 6942 | | || | ||| || || ||||| | | || | | |||||||| || || Sbjct 618039 G-TCTGTTTGTTGGGGATGGTGGTATTGCGCTTGATGAGGGCGGTCATAACTCCTCCGGC 618097 Query 6943 AGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTC 7002 || || | || || ||||| |||| ||| |||| || | || ||| || || ||| Sbjct 618098 GGTCTCAATACCCAGTGACAGCGGTGCCACATCCAGCAGGAGCAAGTCCTGGACGTTTTC 618157 Query 7003 GTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATC 7062 | |||||| | | |||||||| || || | ||| ||||| || || || || || Sbjct 618158 CGACGTGTCACCCATGAGAATGGCGGCCTGCACTGCCGCGCCGTAAGCCACTGCTTCGTC 618217 Query 7063 GGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAAT 7122 || || || | || || || || | || ||||| | || | | || || || Sbjct 618218 TGGATTGATGCTCTTGTTGAGGTCCCTGCCATTAAAGAATTCTTGCAGAAGTTTCTGGAT 618277 Query 7123 TTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGAT 7182 || ||||||| ||| || ||||| ||||| || || || | | | || ||||| || Sbjct 618278 CTTGGGGATTCTTGTGGAGCCACCAACCAACACAATATCGTGAATCTGGGACTTATCCAT 618337 Query 7183 CTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA---TACATTTACGGAACAAGTCCAT 7239 || | ||||| | | || || || ||||| | | | | || | ||| || Sbjct 618338 TTTGGCGTCTCTCAAAGCCTTCTCCACCGGTTCAAGGGTGCCTCTA----AAAAGCTCAG 618393 Query 7240 ACACA-GTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATA 7298 | | | |||||||| || || | ||| ||||| || |||||||| || || || || | Sbjct 618394 AGTTAAGCTCCTCAAAGCGAGCTCTGGTGATGGAGGTGTAGAAATCTACACCCTCATACA 618453 Query 7299 ACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCAC 7358 || || || |||||| | | || | | || || | |||| ||| || | ||| | Sbjct 618454 GGGAGTCGATCTCAATGCTGGCCTGAGAGCTGGAGGACAGGGTTCTCTTGGCTCTCTCGC 618513 Query 7359 ACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTAC 7418 | || || | || | || | ||| | | ||| | || |||||||| || || | Sbjct 618514 AGGCTGTCCTCAACCTCCGGACGGCCCTCTTGTTCTGAGTGATGTCTTTCTTGTGCTTCC 618573 Query 7419 GTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGT 7478 || ||||| || |||||| | | | | || || ||||| |||||||||| Sbjct 618574 TCTTGAACTCCTCCACAAAGTGTTGGACCATGCGATTGTCAAAGTCTTCCCCACCCAAGT 618633 Query 7479 GTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAA 7538 | || || || || || ||||| || |||||||| || | || ||| | | | |||| Sbjct 618634 GAGTGTCTCCAGCTGTGGCTTTCACCTCAAAGATGCCATCCTCGATGGTCAGGATAGAAA 618693 Query 7539 CATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCT-TTGTTC 7597 ||||||| || || || |||| |||||| || || || ||| | ||| | ||| ||| | Sbjct 618694 CATCAAAGGTGCCTCCTCCCAAGTCAAAGATCAGGACATTCCTCTCG-CCTCTCTTGCCC 618752 Query 7598 TTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACAGTT 7656 || || |||||||| || || || || || || || ||||| || || | || ||| || Sbjct 618753 TTGTCCAGACCGTAGGCAATGGCGGCTGCTGTGGGCTCATTGATGATTCTCAGCACA-TT 618811 Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716 ||| |||||||| | | |||||||| ||||| || | || || ||||| ||||| || Sbjct 618812 CAGTCCAGCAATCACTCCAGCATCTTTGGTCGCCTGCCTCTGGGAGTCGTTGAAGTAAGC 618871 Query 7717 CGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTT 7776 |||||| || | || || | |||||| ||| || | ||| | ||| | || || | Sbjct 618872 CGGGACTGTGATTACGGCATTGGTGACTCTCTGGCCCAAATAGGCTTCAGAAATCTCCCT 618931 Query 7777 CATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT-TTCGTTTCACCGT 7835 |||||| ||| ||||| || || ||||| |||| | ||| || ||| || || | Sbjct 618932 CATTTTCACAAGGACCATAGACGAGATCTCCTCAG-GGTAAAAGGTCTTCACCTCCCCCT 618990 Query 7836 TAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAAT 7895 | | || || || | | || || | || ||| ||| || ||| | | ||| Sbjct 618991 TGTACTCCACCTCCACTTTCGGCTTGCCTCCATCAC---TGATCACTTTAAAGGGCCAGA 619047 Query 7896 CTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCAT 7955 |||||| || || ||| ||| |||| |||| || || ||||||||||||| Sbjct 619048 GTTTCATGTCTGACTGAACCACAGCGTCATCAAACCTTCTGCCAATCAGACGCTTTGCAT 619107 Query 7956 CAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGAC 8015 |||||| ||||| ||||| |||||||| ||||| || || || || ||||| || | Sbjct 619108 CAAAAATGGTGTTGTTGGGATTCATGGCGACCTGGTTTTTGGCAGCATCTCCGATGAGCC 619167 Query 8016 GTTCATTATTTTCCGTAAACGCGACGTACGATGGG-GTCGTTCGATTCCCTTGGTCGTTC 8074 || | | | || |||||||| || || | |||| || || | || ||||| ||||| Sbjct 619168 --TC-TCAGTGTCTGTAAACGCCACATA-GCTGGGAGTTGTCCTGTTTCCTTGATCGTTG 619223 Query 8075 GCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAA 8134 ||||| ||||| || | | | || | || || || || || || || ||||| | Sbjct 619224 GCAATGATTTCAACTTTGCCATGCTGGAAAACACCCACACAGGAGTAGGTAGTTCCAAGG 619283 Query 8135 TCAATACCGAT 8145 ||||| || || Sbjct 619284 TCAATTCCAAT 619294 >seq10671 Length=1829250 Score = 178 bits (196), Expect = 2e-39 Identities = 366/543 (67%), Gaps = 6/543 (1%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || |||||||||||||| || | || ||||||||||| ||||| || Sbjct 1495808 GCGCCATAAGCCACAGCCTCATCGGGGTTGATGCTCTTGTTCAGTTCTTTGCCGTTGAAG 1495867 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | || | | | || || || ||||| || || || ||||| |||| || || Sbjct 1495868 AAGTCTTGCAGTAGCTTCTGGATCTTAGGGATACGAGTGGAACCACCAACCAGGACAATG 1495927 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA-- 7217 |||| | | | || || | |||| || || || | || || || || |||| Sbjct 1495928 TCATGGATCTGAGCCTTGTCCAATTTTGCATCACGTAGAGACTTCTCAACTGGGTCCAAG 1495987 Query 7218 -TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276 ||| |||||| | || | || |||||||| || || | ||| || || ||| Sbjct 1495988 GTACC---ACGGAAGAGATCAGCATTGAGCTCCTCAAAGCGAGCCCTGGTGATTGAGGTA 1496044 Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT 7336 ||||||||||| || || || | || || || |||||| | | || | | || || Sbjct 1496045 TAGAAATCAACACCCTCATAAAGGGAGTCGATCTCAATGCTGGCCTGAGTGCTGGAGGAC 1496104 Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG 7396 | || ||||| |||||||| || || || || | |||||| | || | | ||| || Sbjct 1496105 AGGGTGCGCTTAGCGCGCTCGCAGGCAGTACGCAGACGACGGACAGCCCTCTTGTTGTCG 1496164 Query 7397 GAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAA 7456 || || ||||| || || || || |||||| | ||||| | | | Sbjct 1496165 CTGATGTCCTTCTTGTGCTTGCGCTTGAACTCTGTAATAAAGTGGTTGACCATACGGTTG 1496224 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| ||||| || |||||||| || || || ||||| | |||||| ||||||||||| Sbjct 1496225 TCGAAGTCTTCTCCGCCCAAGTGAGTGTCACCAGCGGTGGATTTGACCTCAAAGATACCA 1496284 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||||||| | || | || ||||| || || ||||| || || ||||||||||| || Sbjct 1496285 TCTTCAATGGTCAAGATGGACACATCGAAGGTGCCACCCCCAAGATCAAAAATGAGGACA 1496344 Query 7577 TTC 7579 ||| Sbjct 1496345 TTC 1496347 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/189 (70%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 7956 CAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGAC 8015 |||||| |||||| | |||||||| || |||||||| || || || || || || | Sbjct 1497336 CAAAAATTGTGTTGGTAGGGTTCATAGCAACCTGGTTCTTGGCTGCATCACCAATCAGTC 1497395 Query 8016 GTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCG 8075 ||| ||| | || || || || || ||| || || | || ||||||||||| | Sbjct 1497396 TTTCGGTATCT---GTGAAGGCCACATAGCTTGGCGTGGTCCTGTTTCCTTGGTCGTTGG 1497452 Query 8076 CAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAAT 8135 |||||||||| || | | | || |||| || || || || || || || || | || Sbjct 1497453 CAATAATTTCAACTTTGCCATGCTGGAAGACTCCAACACAGGAGTATGTGGTCCCCAGAT 1497512 Query 8136 CAATACCGA 8144 ||||||||| Sbjct 1497513 CAATACCGA 1497521 >seq592 Length=234143 Score = 156 bits (172), Expect = 5e-33 Identities = 362/543 (67%), Gaps = 6/543 (1%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 ||||| || || || || ||||| |||||||| | || ||||| || |||||| || Sbjct 16541 GCCCCATAAGCAACTGCTTCATCAGGGTTAATGCTCTTGTTCAGATCACGACCGTTGAAG 16482 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 |||| | | || || || || || || || || || ||||| || | || || Sbjct 16481 AAATCTTGCAGGAGTTTCTGGATCTTGGGAATGCGAGTGGAGCCACCAACAAGCACAATA 16422 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | | || || | ||| | || || | | || || ||||| || | | Sbjct 16421 TCATGGATCTGAGCCTTGTCCAGCTTGGCATCACGCAAGGCCTTCTCCACAGGGTCTAGA 16362 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 ||| |||| ||| | || |||||||| ||||| | ||||||||| || ||| Sbjct 16361 GTCCCACGAAACAGGTCAGAATTGAGCTCCTCAAAGCGTGCCCTGGTAATGGAGGTGTAG 16302 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || ||||| || ||||| | || || || || ||| | | |||| | || || | | Sbjct 16301 AAGTCAACCCCCTCGTAGAGGGAGTCGATCTCGATGCTGGCCTGTGTGCTGGAGGACAGC 16242 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| || || || || || |||| | |||||| | |||||| ||| || | Sbjct 16241 GTACGCTTGGCCCGTTCGCAAGCTGTTCTGAGACGACGTACTGCACGCTTGTTGCCTGTG 16182 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAA 7456 || || ||||| ||| || || ||||| |||||| | || | | | | Sbjct 16181 ATGTCCTTCTTGAATTTGCGCTTGAACTCAGTGATGAAGTGGTTGACCATGCGGTTG--- 16125 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || ||||| || | ||| || || || || || | ||||| ||||||||||| Sbjct 16124 TCAAAGTCCTCACCTCCAAGGTGGGTGTCACCGGCTGTGGACTTGACCTCAAAGATACCA 16065 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | | || || ||||| || ||||||||||||||||| ||||| ||| Sbjct 16064 TCCTCGATGGTCAGAATGGACACGTCAAAGGTGCCACCACCCAGGTCAAAGATGAGGACG 16005 Query 7577 TTC 7579 ||| Sbjct 16004 TTC 16002 Score = 100 bits (110), Expect = 4e-16 Identities = 101/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 7607 CCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACAGTTCAGGCCAGC 7665 || || ||||| ||||| || ||||| ||||||||||| || || ||| ||||||||||| Sbjct 14658 CCATAGGCGATGGCCGCTGCTGTTGGCTCATTAATAATGCGGAGGACA-TTCAGGCCAGC 14600 Query 7666 AATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGT 7725 |||||| | || ||||| || ||||| | || || ||||| |||||||| || || || Sbjct 14599 AATAGTACCAGCGTCTTTGGTGGCTTGCCTCTGAGAGTCGTTGAAGTAGGCAGGTACTGT 14540 Query 7726 TACGACCGC 7734 | ||| || Sbjct 14539 GATGACTGC 14531 >seq10722 Length=1616126 Score = 149 bits (164), Expect = 8e-31 Identities = 362/543 (67%), Gaps = 8/543 (1%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| || || ||||| || || || || | || || |||||||| ||||| || Sbjct 765945 GCACCGTACGCAACAGCCTCGTCTGGATTTATGCTCTTGTTGAGTTCTTTTCCGTTGAAG 765886 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | | | || ||||| ||||| || || || || || |||| ||||| Sbjct 765885 AAATCCTGCAGGAGCTTCTGGATTTTAGGGATGCGAGTTGACCCTCCAACCAGCACGATG 765826 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | | | || || || | || | || || || | ||| || ||||| |||| Sbjct 765825 TCGTGGATCTGGGACTTGTCCAGTTTAGCATCACGGAGGGATTTCTCCACAGGGTCCAGC 765766 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 ||||||| ||| ||| ||||| || || || | ||| ||||| || ||| Sbjct 765765 GTGCCGCGGAACAGGTCGGCGTTCAGCTCCTCGAAGCGAGCCCTGGTGATGGAGGTGTAG 765706 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || || ||||| ||||| | ||| || || || ||| | | || | | || || | | Sbjct 765705 AAGTCGACGCCCTCGTAGAGCGAGTCGATCTCGATGCTGGCCTGAGTGCTGGAGGAGAGC 765646 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || || || || | ||| || ||||| || | |||||| | || | | ||| | Sbjct 765645 GTGCGTTTCGCTCTCTCGCAGGCCGTCCGCAGACGACGCACCGCCCTCTTGTTGTCACTG 765586 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGA-GAAGTG-TCGA--AGGAGTCTCGA 7455 || |||||||| | ||| || || ||||| ||| |||||| | || | | | | Sbjct 765585 ATGTCTTTCTTGTATTTGCGCTTGAACTCGG-AGATGAAGTGATTGACCATGCGGTTG-- 765529 Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||| || ||||| |||| ||| || || || || || | ||||| || ||||| || Sbjct 765528 -TCGAAGTCCTCACCGCCCAGGTGAGTGTCTCCAGCTGTGGACTTGACCTCGAAGATGCC 765470 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 |||||||| | | | || ||||||||||| || || || || || ||||| || || Sbjct 765469 ATCTTCAATGGTCAGGATAGAGACATCAAACGTGCCGCCGCCAAGATCGAAAATCAGCAC 765410 Query 7576 GTT 7578 ||| Sbjct 765409 GTT 765407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635047573117400