Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4474 84.2 3e-11 seq10607 82.4 9e-11 >seq4474 Length=14602 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 102544 AGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAA 102603 ||||||| ||||||||||||||||||||| | | || |||||||| |||||||| |||| Sbjct 6013 AGAATCCCTTTGACTTCATGGAGAACATTTCCTTGGAGGGGAAGACCAACTTCTTTGAAA 6072 Query 102604 AGAGGGTTGGGGACTA 102619 || | ||||| || || Sbjct 6073 AGCGAGTTGGCGAGTA 6088 >seq10607 Length=2140885 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 112883 GAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAAT 112942 ||| ||| | |||||||||||| || | ||||| ||||| || || ||||| || ||||| Sbjct 829849 GAATGGTATCCGTAACAGTCTTCTGCTTGCACCGATGCCCACCGCTTCCACAGCCCAAAT 829790 Query 112943 CTTGGGTAATAATGAATGCTTTGAACCCTACAC 112975 ||||||||||||| | | |||| || ||||| Sbjct 829789 TCTGGGTAATAATGAGTCCATTGAGCCATACAC 829757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620659104129200