Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq10607 111 2e-19
seq4474 87.8 2e-12
>seq10607
Length=2140885
Score = 111 bits (122), Expect = 2e-19
Identities = 118/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551
||||||||| ||| ||||| | ||| ||||||||||| ||| | ||||| || ||
Sbjct 830770 CTCATCCTTGCTTGTATACTCCACAATCTCTGTACACAAATTGCTGCATTTAATGGTGCC 830829
Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611
| |||| ||||| ||||| | ||||| ||||| ||||| ||||||||||| || ||
Sbjct 830830 GAGGTTCTGCTGGTTGCTCTTCCTATTGCAGGCATCTTTGTAAAGCATGTAGGGAGTGCC 830889
Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACAC 106647
||||| ||||| |||| | ||| || | ||||||
Sbjct 830890 AGTCTCAGTCTGAGACTCAATAATAGCATACCACAC 830925
>seq4474
Length=14602
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045
|| || ||||||||||| |||||||||||||||||||| || | | |||||| |||||
Sbjct 6088 TACTCGCCAACTCGCTTTTCAAAGAAGTTGGTCTTCCCCTCCAAGGAAATGTTCTCCATG 6029
Query 117046 AAGTCAAATGGATTCT 117061
|||||||| |||||||
Sbjct 6028 AAGTCAAAGGGATTCT 6013
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589901631951400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |