Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq10607 111 2e-19 seq4474 87.8 2e-12 >seq10607 Length=2140885 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 ||||||||| ||| ||||| | ||| ||||||||||| ||| | ||||| || || Sbjct 830770 CTCATCCTTGCTTGTATACTCCACAATCTCTGTACACAAATTGCTGCATTTAATGGTGCC 830829 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 | |||| ||||| ||||| | ||||| ||||| ||||| ||||||||||| || || Sbjct 830830 GAGGTTCTGCTGGTTGCTCTTCCTATTGCAGGCATCTTTGTAAAGCATGTAGGGAGTGCC 830889 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACAC 106647 ||||| ||||| |||| | ||| || | |||||| Sbjct 830890 AGTCTCAGTCTGAGACTCAATAATAGCATACCACAC 830925 >seq4474 Length=14602 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || ||||||||||| |||||||||||||||||||| || | | |||||| ||||| Sbjct 6088 TACTCGCCAACTCGCTTTTCAAAGAAGTTGGTCTTCCCCTCCAAGGAAATGTTCTCCATG 6029 Query 117046 AAGTCAAATGGATTCT 117061 |||||||| ||||||| Sbjct 6028 AAGTCAAAGGGATTCT 6013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589901631951400