Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq183 152 1e-31 seq10555 145 2e-29 seq440 91.5 3e-13 >seq183 Length=784777 Score = 152 bits (168), Expect = 1e-31 Identities = 167/218 (77%), Gaps = 8/218 (4%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 ||||| || |||||||||||||| || |||||||| |||| |||| || | |||||||| Sbjct 332104 ACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAGTCGGACAAG-GTGCGTCCATCTTC 332162 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || |||||||| | | || |||||||| ||||||||||||||||| || Sbjct 332163 CAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTG 332222 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGT 195107 || || ||||| |||||||| ||||| |||| || || |||||||| | || Sbjct 332223 GATCTTGGCTTTGACATTCTCAATTGTGTC---ACTTGGCTCAACCTCAAGGGTGATGGT 332279 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATG 195145 ||| || || | || || || || | |||||||| || Sbjct 332280 CTTGCCAGTGAGGGTCTTCACAAAGATTTGCATTTCTG 332317 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| ||||| || || ||||| |||| || || | ||||||||| Sbjct 331876 ACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 331935 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| | | || || ||||| ||||||||||||||||| || Sbjct 331936 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGG 331995 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || || ||| ||||||||||||||||| ||| || || || ||||| | ||| Sbjct 331996 ATCTTGGCCTTCACGTTCTCAATGGTGTC---GCTTGGCTCAACCTCGAGGGTGATGGTC 332052 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 332053 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 332084 Score = 127 bits (140), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 10/228 (4%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || ||||| ||||||||||| || || || ||||| || | || || Sbjct 331632 CTGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 331691 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGT----TGTTGGTCTGGAGGAAT 195035 | ||||||||| ||||| || || || ||||| | | || || ||||| ||||| Sbjct 331692 CGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCAACCTCTGCTGATCTGGGGGAAT 331751 Query 195036 GCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCAC 195092 ||| ||||||||||| || || ||||| |||||||||||||| ||| || || Sbjct 331752 GCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTC---GCTTGGCTCAAC 331808 Query 195093 TTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||||| | ||||| || |||| || |||||||| | ||||| Sbjct 331809 CTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTTACGAAGATCTGCAT 331856 >seq10555 Length=3328687 Score = 145 bits (160), Expect = 2e-29 Identities = 160/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || |||||||| || || || ||||| |||| || || | |||||||| Sbjct 3315685 ACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCC 3315744 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| |||||||| | || || ||||| |||||||||||||| || || || Sbjct 3315745 AGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGG 3315804 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || || |||||||||||||||||||| |||| |||||||| || || | ||| Sbjct 3315805 ATCTTGGCTTTGACGTTCTCAATGGTGTC---ACTTGGCTCCACTTCGAGAGTGATGGTC 3315861 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 3315862 TTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 3315893 Score = 122 bits (134), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || |||||||| || || || ||||| |||| || || | |||||||| Sbjct 3315229 ACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCC 3315288 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || ||||| || || || ||||| || || || || || || || || Sbjct 3315289 AGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCCTGG 3315348 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 ||||| ||| || || ||||||||||| |||| |||||||| || || | ||| Sbjct 3315349 ATTTTAGCCTTCACATTTTCAATGGTGTC---ACTTGGCTCCACTTCGAGAGTGATGGTC 3315405 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 3315406 TTACCAGTCAGCGTCTTCACGAAGATCTGCAT 3315437 Score = 118 bits (130), Expect = 2e-21 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| |||| || || | || ||||| Sbjct 3318435 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 3318494 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| |||||||| || || || ||||| || || || || || || ||||| Sbjct 3318495 AGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCTTGG 3318554 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || || ||||||||||| |||||||| ||| ||||| || | ||| | ||| Sbjct 3318555 ATCTTGGCTTTGACGTTCTCGATGGTGTC---GCTTGGCTCCACCTCCAAGGTGATGGTC 3318611 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 3318612 TTACCAGTCAGCGTCTTCACAAAGATCTGCAT 3318643 Score = 111 bits (122), Expect = 3e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || ||| || || || ||||| |||| ||||| | |||||||| Sbjct 3315457 ACAAGGTGGAGGGTACTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCATCTTCA 3315516 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || ||||| || || || ||||| || || || || || || ||||| Sbjct 3315517 AGCTGCTTACCGGCAAAGATCAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTATCTTGG 3315576 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||||||||||| ||||| |||||| || | ||| | ||||| Sbjct 3315577 ATCTTGGCTTTGACGTTCTCAATAGTGTCGCTGGGTTCCACCTCCAAGGTGATGGTCTTA 3315636 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | ||||| Sbjct 3315637 CCAGTGAGGGTCTTGACAAAGATCTGCAT 3315665 >seq440 Length=347625 Score = 91.5 bits (100), Expect = 3e-13 Identities = 123/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 125539 GGCAGGGGAGGACAATCTGCTTTGCGTTTTGAGAGACTTCGAAAAGAAAAGAGACACAAC 125598 ||||| ||||| || |||||||||||||| | | | ||| || |||||||||||| Sbjct 271907 GGCAGAGGAGGTCAGTCTGCTTTGCGTTTCGCCCGTTTGAGAATGGAGAAGAGACACAAC 271848 Query 125599 TATTTGAGGAAAGTCGCAGAGAATGCAACTCA-ATGTTTTTTGCAAGACAACAAGTGCAA 125657 ||| |||| || || ||||||| || || ||||| | | | || ||||| ||| Sbjct 271847 TATGTGAGAAAGGTGGCAGAGACGGCCGTCCAGCTGTTTGTATCCA-ACGACAAGGTCAA 271789 Query 125658 CGTCATTGGGATTGTCATTGCTGGATCGGCAGAGTTCAAAACAAAGCTT 125706 ||| |||||| || |||||||||| || || ||||| || ||||| Sbjct 271788 CGTGGCTGGGATGGTTCTTGCTGGATCAGCTGACTTCAAGACTGAGCTT 271740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109328999473745