Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq10555 109 4e-19 seq183 104 2e-17 >seq10555 Length=3328687 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | | || | ||| | || || || ||||| ||||| ||||| || Sbjct 3315439 CCTCCCCTCAGACGGAGGACAAGGTGGAGGGTACTCTCCTTCTGGATGTTGTAGTCGGAG 3315498 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || ||||| || |||||||| || || || |||||||| | || Sbjct 3315499 AGAGTACGACCATCTTCAAGCTGCTTACCGGCAAAGATCAGACGCTGCTGGTCAGGTGGG 3315558 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | |||||||| || ||||| ||||||| | || | || | || || || Sbjct 3315559 ATTCCCTCCTTATCTTGGATCTTGGCTTTGACGTTCTCAATAGTGTCGCTGGGTTCCACC 3315618 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| || || ||||| ||||| ||||||||||||||| Sbjct 3315619 TCCAAGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCATA 3315666 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | | |||| ||| | ||| || ||||| ||||| ||||| || Sbjct 3318417 CCTCCCCTCAGACGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3318476 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | ||| | || |||||||| || || || || || || || |||||||| | || Sbjct 3318477 AGGGTGCGTCCGTCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGGG 3318536 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | |||||||| || ||||| ||||||| | || | || | | ||| || Sbjct 3318537 ATTCCCTCCTTATCTTGGATCTTGGCTTTGACGTTCTCGATGGTGTCGCTTGGCTCCACC 3318596 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | ||| ||||| || || || || |||||||||||||||||||| || Sbjct 3318597 TCCAAGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCATCTT 3318646 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | ||| |||| |||||||| || || ||||| Sbjct 3315247 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAG 3315306 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | |||||||| || || || || || | Sbjct 3315307 ATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCCTGGATTTTAGCCTTCACATTT 3315366 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| | ||| || |||| || ||||| || || || || |||||||| Sbjct 3315367 TCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTCTTACCAGTCAGCGTCTTCACG 3315426 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 3315427 AAGATCTGCATA 3315438 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | ||| |||| |||||||| || || || || Sbjct 3315703 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCGAAG 3315762 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || |||||||| | || | || ||||| || ||||| ||||||| Sbjct 3315763 ATCAAACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTTGGCTTTGACGTTC 3315822 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| | ||| || |||| || ||||| || || || || |||||||| Sbjct 3315823 TCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACG 3315882 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 3315883 AAGATCTGCATA 3315894 >seq183 Length=784777 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || ||| | || |||| ||||||||||| |||||||| Sbjct 331893 TTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAA 331952 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | | ||||| ||| | || | || || ||||| ||||| || ||| Sbjct 331953 GATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTT 332012 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || | | |||||| |||| ||| ||||| || || || || |||||||| Sbjct 332013 CTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 332072 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 332073 GAAGATCTGCAT 332084 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| || || ||||| || | | | ||| |||| |||||||| || || || || Sbjct 332122 TCTTTCTGGATATTGTAGTCGGACAAGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAG 332181 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | ||||||||| | || | || || ||||| ||||| |||||| || Sbjct 332182 ATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGAC--AT 332239 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| | |||||| || | ||| ||||| || || ||||| ||||||| Sbjct 332240 TCTCAATTGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 332299 Query 34969 CAAAGATCTGCAT 34981 ||||||| ||||| Sbjct 332300 CAAAGATTTGCAT 332312 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 ||| ||||| | | || |||| ||| | ||| || ||||| ||||| ||||| || Sbjct 331625 TCCGCCCCTGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 331684 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATAT----TAGTCGTTGCTGGTCTT 34869 ||| | || |||| ||||||||||| |||||||| || | | ||||| ||| Sbjct 331685 CAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCAACCTCTGCTGATCTG 331744 Query 34870 GCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGC 34927 | || | ||||| ||||| ||||| |||||| || || || | || | | Sbjct 331745 GGGGAATGCCCTCTTTGTCTTGGATCTTGGCTTTGAC--ATTCTCAATGGTGTCGCTTGG 331802 Query 34928 CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||| || | ||| ||||| || || || || ||||| || ||||||||||| Sbjct 331803 CTCAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTTACGAAGATCTGCAT 331856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324591127273080