Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq10555 109 4e-19
seq183 104 2e-17
>seq10555
Length=3328687
Score = 109 bits (120), Expect = 4e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|||||||||| | | || | ||| | || || || ||||| ||||| ||||| ||
Sbjct 3315439 CCTCCCCTCAGACGGAGGACAAGGTGGAGGGTACTCTCCTTCTGGATGTTGTAGTCGGAG 3315498
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
|| | || |||| || ||||| || |||||||| || || || |||||||| | ||
Sbjct 3315499 AGAGTACGACCATCTTCAAGCTGCTTACCGGCAAAGATCAGACGCTGCTGGTCAGGTGGG 3315558
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934
| |||||||| || ||||| ||||||| | || | || | || || ||
Sbjct 3315559 ATTCCCTCCTTATCTTGGATCTTGGCTTTGACGTTCTCAATAGTGTCGCTGGGTTCCACC 3315618
Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| | ||| ||||| || || ||||| ||||| |||||||||||||||
Sbjct 3315619 TCCAAGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCATA 3315666
Score = 109 bits (120), Expect = 4e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|||||||||| | | |||| ||| | ||| || ||||| ||||| ||||| ||
Sbjct 3318417 CCTCCCCTCAGACGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3318476
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
||| | ||| | || |||||||| || || || || || || || |||||||| | ||
Sbjct 3318477 AGGGTGCGTCCGTCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGGG 3318536
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934
| |||||||| || ||||| ||||||| | || | || | | ||| ||
Sbjct 3318537 ATTCCCTCCTTATCTTGGATCTTGGCTTTGACGTTCTCGATGGTGTCGCTTGGCTCCACC 3318596
Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|| | ||| ||||| || || || || |||||||||||||||||||| ||
Sbjct 3318597 TCCAAGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCATCTT 3318646
Score = 98.7 bits (108), Expect = 6e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| || ||| | ||| |||| |||||||| || || |||||
Sbjct 3315247 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAG 3315306
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| | || | |||||||| || || || || || |
Sbjct 3315307 ATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCCTGGATTTTAGCCTTCACATTT 3315366
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | |||| | ||| || |||| || ||||| || || || || ||||||||
Sbjct 3315367 TCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTCTTACCAGTCAGCGTCTTCACG 3315426
Query 34971 AAGATCTGCATA 34982
||||||||||||
Sbjct 3315427 AAGATCTGCATA 3315438
Score = 98.7 bits (108), Expect = 6e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| || ||| | ||| |||| |||||||| || || || ||
Sbjct 3315703 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCGAAG 3315762
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | || |||||||| | || | || ||||| || ||||| |||||||
Sbjct 3315763 ATCAAACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTTGGCTTTGACGTTC 3315822
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | |||| | ||| || |||| || ||||| || || || || ||||||||
Sbjct 3315823 TCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACG 3315882
Query 34971 AAGATCTGCATA 34982
||||||||||||
Sbjct 3315883 AAGATCTGCATA 3315894
>seq183
Length=784777
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||||||||| ||||| ||||| || ||| | || |||| ||||||||||| ||||||||
Sbjct 331893 TTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAA 331952
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| | | ||||| ||| | || | || || ||||| ||||| || |||
Sbjct 331953 GATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTT 332012
Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
| || | || | | |||||| |||| ||| ||||| || || || || ||||||||
Sbjct 332013 CTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 332072
Query 34970 AAAGATCTGCAT 34981
|||||||||||
Sbjct 332073 GAAGATCTGCAT 332084
Score = 100 bits (110), Expect = 2e-16
Identities = 139/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|||||||| || || ||||| || | | | ||| |||| |||||||| || || || ||
Sbjct 332122 TCTTTCTGGATATTGTAGTCGGACAAGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAG 332181
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | | ||||||||| | || | || || ||||| ||||| |||||| ||
Sbjct 332182 ATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGAC--AT 332239
Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
|| || | |||| | |||||| || | ||| ||||| || || ||||| |||||||
Sbjct 332240 TCTCAATTGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 332299
Query 34969 CAAAGATCTGCAT 34981
||||||| |||||
Sbjct 332300 CAAAGATTTGCAT 332312
Score = 91.5 bits (100), Expect = 1e-13
Identities = 162/234 (69%), Gaps = 8/234 (3%)
Strand=Plus/Plus
Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813
||| ||||| | | || |||| ||| | ||| || ||||| ||||| ||||| ||
Sbjct 331625 TCCGCCCCTGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 331684
Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATAT----TAGTCGTTGCTGGTCTT 34869
||| | || |||| ||||||||||| |||||||| || | | ||||| |||
Sbjct 331685 CAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCAACCTCTGCTGATCTG 331744
Query 34870 GCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGC 34927
| || | ||||| ||||| ||||| |||||| || || || | || | |
Sbjct 331745 GGGGAATGCCCTCTTTGTCTTGGATCTTGGCTTTGAC--ATTCTCAATGGTGTCGCTTGG 331802
Query 34928 CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|||||| || | ||| ||||| || || || || ||||| || |||||||||||
Sbjct 331803 CTCAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTTACGAAGATCTGCAT 331856
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324591127273080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |