Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq10607 87.8 2e-12
seq10547 87.8 2e-12
>seq10607
Length=2140885
Score = 87.8 bits (96), Expect = 2e-12
Identities = 122/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109
|||| ||||| || ||||| ||||| | || ||| | || |||| ||| || ||||
Sbjct 828728 TCCAGCCATAAAAGTGCATGCTAGTAAGCTTGCCATAGTTGGGCTCTGCAATGTGGATAT 828787
Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169
| || || |||||||| || || || || ||||| ||||| ||||| | | | |||
Sbjct 828788 TGAGGGACTGACTCTGGTCGATGAAAGCCCCTCTGTCAGCAGCCATCTTGAGGACCACCT 828847
Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA 47220
| || | ||||||||||| || ||||| | | || | ||| |||||||
Sbjct 828848 TCTGAGAAATCTCCCATACAGTCTTATACAACTCCTTCAAGTCATCTGGGA 828898
>seq10547
Length=7526941
Score = 87.8 bits (96), Expect = 2e-12
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | ||||| || |||| | |||||||||| |||||||| |
Sbjct 2162723 CCTCATCTCTGCTGATGAGCTCATTTGAGTATGTAAGTCCAGGCATCAAACCTCTTTTCT 2162782
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | |||| | || | |||||| || ||||| || || || ||||| ||||||||||| |
Sbjct 2162783 TCAGCCAGTAGATGGCAGCAAACGACCCAGAGAAAAAGATGCCTTCAACTGCTGCAAATG 2162842
Query 19103 C 19103
|
Sbjct 2162843 C 2162843
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562033372025400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |