Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq167 163 2e-34 seq10671 111 1e-18 seq10722 102 7e-16 >seq167 Length=797236 Score = 163 bits (180), Expect = 2e-34 Identities = 379/564 (67%), Gaps = 8/564 (1%) Strand=Plus/Minus Query 549977 ATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTT 550036 ||||| || |||| | || || || || | ||||| || || ||||| |||||| Sbjct 619312 ATGTCTAAGGGAGTATCCATTGGAATTGACCTTGGAACTACCTACTCCTGTGTGGGTGTT 619253 Query 550037 TGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCT 550096 | || |||| ||||||||||| |||||||| |||||||| ||||| || ||||| Sbjct 619252 TTCCAGCATGGCAAAGTTGAAATCATTGCCAACGATCAAGGAAACAGGACAACTCCCAGC 619193 Query 550097 TATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACT 550156 ||||| | || || || ||||| | | || ||||| || ||| | || | | | Sbjct 619192 TATGTGGCGTTTACAGACACTGAGAGGCTCATCGGAGATGCTGCCAAAAACCAGGTCGCC 619133 Query 550157 GGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGAT 550216 ||||| | ||| || ||||||||||| || ||| | ||||| ||||| ||| |||| Sbjct 619132 ATGAATCCCAACAACACCATTTTTGATGCAAAGCGTCTGATTGGCAGAAGGTTTGATGAC 619073 Query 550217 TCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAA 550276 | |||||| |||| ||||| | ||||| || || | | | || | || || Sbjct 619072 GCTGTGGTTCAGTCAGACATGAAACTCTGGCCCTTTAAAGTGATCAGTGATGGAGGCAAG 619013 Query 550277 CCTTATATTGAAGCT--ACT-CATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATT 550333 || | | || || | | | || | ||| || || |||| || || | || Sbjct 619012 CC-GAAAGTGGAGGTGGAGTACAAGGGGGA--GGTGAAGACCTTTTACCCTGAGGAGATC 618956 Query 550334 TCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGT 550392 || |||||||| | ||||||||| | | | || | | |||| | ||| ||| Sbjct 618955 TCGTCTATGGTCCTTGTGAAAATGAGGGAGATTTCTGAAGCCTAT-TTGGGCCAGAGAGT 618897 Query 550393 TACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAA 550452 || |||| ||||| || || || || || || || ||||| || | || || || || Sbjct 618896 CACCAATGCCGTAATCACAGTCCCGGCTTACTTCAACGACTCCCAGAGGCAGGCGACCAA 618837 Query 550453 AGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGC 550512 |||||||||| ||||||||||| ||||| || | || |||||||| || || || || Sbjct 618836 AGATGCTGGAGTGATTGCTGGACTGAATGTGCTGAGAATCATCAATGAGCCCACAGCAGC 618777 Query 550513 TGCACTTGCATATGGACTTGATAA 550536 || |||| || || || || || Sbjct 618776 CGCCATTGCCTACGGTCTGGACAA 618753 >seq10671 Length=1829250 Score = 111 bits (122), Expect = 1e-18 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | ||||| ||| | || |||||||| |||||||| || | || |||| || Sbjct 1497526 AGCTGTCGGTATTGATCTGGGGACCACATACTCCTGTGTTGGAGTCTTCCAGCATGGCAA 1497467 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 |||||||||||||||||| || ||||| ||||| || || ||| ||||| | ||||| Sbjct 1497466 AGTTGAAATTATTGCCAACGACCAAGGAAACAGGACCACGCCAAGCTATGTGGCCTTCAC 1497407 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || || ||| | ||||||||||||| || | || | || || |||||||| Sbjct 1497406 AGATACCGAAAGACTGATTGGTGATGCAGCCAAGAACCAGGTTGCTATGAACCCTACCAA 1497347 Query 550171 TACTATTTTTG 550181 || ||||||| Sbjct 1497346 CACAATTTTTG 1497336 Score = 109 bits (120), Expect = 4e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || || || || || || || || || || || ||||| |||||||| |||| Sbjct 1496769 ATGCTGTGATCACAGTGCCTGCCTACTTCAACGATTCCCAGCGTCAGGCTACTAAGGATG 1496710 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| || |||| || |||||||| ||||| |||||||| || |||||||||||| Sbjct 1496709 CTGGAACCATCTCTGGCCTGAATGTTCTGCGTATCATCAATGAGCCAACTGCTGCTGCAA 1496650 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| || || || || ||| Sbjct 1496649 TTGCTTACGGTCTGGACAAA 1496630 Score = 98.7 bits (108), Expect = 8e-15 Identities = 140/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||| |||| || ||| | ||||||||||| ||||| || | | || |||| ||| Sbjct 1513766 GCTGTAGGCATTGATCTGGGAACCACATACTCATGTGTGGGAATCTTCCAGCATGGCAAA 1513825 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 ||||||||||||||||| || ||||| ||||| || || ||| ||||| | ||||| Sbjct 1513826 GTTGAAATTATTGCCAACGACCAAGGAAACAGGACCACGCCAAGCTATGTGGCCTTCACA 1513885 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAA--GCCACTGGTAATCCTACCA 550169 || || ||| | ||||||||||||| || | ||| | || || || || |||| Sbjct 1513886 GATACCGAAAGACTGATTGGTGATGCAGCCAAGAACCAAGTGGCAATG--AACCCAACCA 1513943 Query 550170 ATACTATTTTTGATG 550184 | || || |||| || Sbjct 1513944 ACACAATCTTTGGTG 1513958 >seq10722 Length=1616126 Score = 102 bits (112), Expect = 7e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| | |||||||| || || ||||||||||| || ||||| ||||| || |||| Sbjct 764317 ATGCAGTGGTTACTGTACCTGCGTACTTTAATGACTCTCAGCGTCAGGCTACAAAGGATG 764376 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||| ||||||| ||||| ||||| || |||||||| || || || ||||| Sbjct 764377 CAGGGACCATTTCTGGACTAAATGTCCTTCGAATCATCAATGAGCCAACAGCAGCTGCCA 764436 Query 550518 TTGCATATGGACTTGATAA 550536 | || || || || || || Sbjct 764437 TAGCCTACGGCCTGGACAA 764455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028728284785150