Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq54 107 2e-18 >seq54 Length=1125963 Score = 107 bits (118), Expect = 2e-18 Identities = 127/171 (74%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 |||||| | || || || || | ||||||||||| || || || || ||||| || || Sbjct 982184 CATGTCTTTATATTCAGCACCATAGTGCCTCCACTGAAAACCATATACAGGTCCTAGATC 982125 Query 30210 TCCCTCTTCCCTGTGCTC---GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGC 30266 |||||| |||| |||| || || |||||||||| ||||| | || || || || Sbjct 982124 TCCCTCCTCCC---GCTCAGTAAATCCACTCTTGTCCAGGAAGTCCCGTGACCCATTCGC 982068 Query 30267 GTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGAccc 30317 ||||| |||||||| || ||||| || |||||||||| ||||| || || Sbjct 982067 ATCCCAAATCTTTACACCTTTCTCTGAAAGCTCTTTGGCATTTGTTGAACC 982017 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| || || || | ||||| ||||| || || || Sbjct 982965 AGTCCTGTGATGTGTGCTATCATGTATGTCAGAAGGGCATAGCTTGCGATATTGAATGGA 982906 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || || || |||||||| | |||||| | || || || || || || || Sbjct 982905 ACACCCAGACCGATATCCCCCGAGCGCTGGTATAATTGGCAAGACAGTTCACCCTCAGAG 982846 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || || ||||| |||| | ||||| || ||||||||||| || Sbjct 982845 ACATAGAACTGGCACAGAGCATGGCAGGGTGGAAGAGCCATCAG 982802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408564139410155