Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq10555 122 7e-23 seq183 104 2e-17 >seq10555 Length=3328687 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || | ||| | || | ||| ||||| || || || || || ||||| |||| Sbjct 3315667 CCTCCCCTCAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3315726 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||| |||||||| || || ||||||||||| || ||||| ||| Sbjct 3315727 AGGGTGCGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCGGGAGGA 3315786 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| ||||| || || || ||| || | || | |||||| | |||||| Sbjct 3315787 ATGCCTTCCTTATCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGCTCCACT 3315846 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||||| || ||||| || | || || || || |||||||| Sbjct 3315847 TCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 3315893 >seq183 Length=784777 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || | ||| | || | ||| || || || ||||| || |||||||| |||| Sbjct 332086 CCTCCCCTGAGACGAAGGACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAGTCGGAC 332145 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||| ||||| || || || ||||| | ||| || || || ||| Sbjct 332146 AAGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 332205 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| || || || || ||| ||| | || | |||||| | || || Sbjct 332206 ATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTCTCAATTGTGTCACTTGGCTCAACC 332265 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || ||||| || | || || ||||| || ||||| Sbjct 332266 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATTTGCAT 332312 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || | ||| | || | ||| ||||| |||||||| || || ||||| |||| Sbjct 331858 CCTCCCCTGAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 331917 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||| || || || ||||| ||||| | ||| ||||| || ||| Sbjct 331918 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGA 331977 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| || || || || || || | || | ||||| | || || Sbjct 331978 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACC 332037 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || |||| || ||||| || | || || || || ||||||||| Sbjct 332038 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 332085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396226553782395