Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq42 210 4e-49
seq10524 176 8e-39
seq306 140 6e-28
seq715 136 7e-27
seq10696 134 3e-26
seq4474 102 2e-16
seq10607 96.9 6e-15
>seq42
Length=1087958
Score = 210 bits (232), Expect = 4e-49
Identities = 193/244 (79%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448
|||| ||||| || | ||| | || |||| ||| ||||| ||||||||||| || |
Sbjct 16269 GCTGGCAGCCGCTGCTGACGTGTCTGAGCACCTTCTGCTTGAGCTGGGCCACCTGCTCGC 16328
Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508
| || |||||||| || | ||||| || |||||||| |||||||| ||||| ||| |
Sbjct 16329 GGAGCACGGACGCCGTGCTCGACAGCCCCGCGTTGTCCGACTTGAGAACCTTGACTCGGT 16388
Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568
||||||| ||||||||||| ||||| || ||||| ||||| ||||||||||||| |||||
Sbjct 16389 CCTCCAGGCGCGCGATGCGCTCCAGCTTTCGCCGCCGGCACTTGGTGGCTGCCAGGCGGT 16448
Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGACT 241628
||| ||| | ||| || ||||||||||| || |||||| ||||| ||| || || |||
Sbjct 16449 TCCTGAGACGCTTCCGCTCCGCCTTGATCCGCTCCTGGCTCTCCAGGTCAATGGGCGACA 16508
Query 241629 TGGG 241632
||||
Sbjct 16509 TGGG 16512
Score = 89.7 bits (98), Expect = 1e-12
Identities = 89/115 (77%), Gaps = 8/115 (7%)
Strand=Plus/Plus
Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985
|||| ||||| ||||||||| | || || || |||||||| || | ||||| |||||||
Sbjct 16302 TCTGCTTGAGCTGGGCCACCTGCTCGCGGAGCACGGACGCCGTGCTCGACAGCCCCGCGT 16361
Query 238986 TATCAGACTTGAGCAT------TC--TCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032
| || |||||||| | || |||||||| ||||||||||| ||||||||
Sbjct 16362 TGTCCGACTTGAGAACCTTGACTCGGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 16416
>seq10524
Length=4055774
Score = 176 bits (194), Expect = 8e-39
Identities = 165/210 (79%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 241408 GTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATT 241467
|||| || ||||| ||| ||||| || ||||| || || ||||| | || |||| | |
Sbjct 139159 GTGCGTCATGACCTTCTGCTTGAGCTGCGCCACTTGCTCGCGCAGCAGCGAGGCGGCACT 139100
Query 241468 GGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCG 241527
|| || || |||||||| | ||| ||||||||||| || |||||||| |||| ||||||
Sbjct 139099 CGAGAGCCCGGCGTTGTCCGTCTTCAGCACCTTCACCTTGTCCTCCAGGCGCGAGATGCG 139040
Query 241528 TTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTC 241587
|||||| ||||||| | ||| |||||||| |||| ||||| || || | ||| || ||
Sbjct 139039 TTCCAGCTTGCGCCTCCTGCACTTGGTGGCCGCCAGACGGTTGCGTAGCCGCTTGCGCTC 138980
Query 241588 CGCCTTGATGCGTTCCTGGTCCTCCATGTC 241617
||||| ||||| ||||||||||||| |||
Sbjct 138979 AGCCTTCATGCGCTCCTGGTCCTCCAGGTC 138950
>seq306
Length=458256
Score = 140 bits (154), Expect = 6e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474
|||||| ||| ||||| || |||||||| |||| ||| ||| ||||| || ||
Sbjct 356797 AGGACCCTCTGCTTGAGCTGCGCCACCTGCTCCCTCAGCACGCTGGCGGTGGAGGCGAGC 356738
Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534
| | ||| | |||||| |||||| || ||||||||||||| |||||| |||||
Sbjct 356737 TCCGTGTTCTGGCTCTTGAGGGACTTCACCTTGTCCTCCAGCCGCGAGATGCGCTCCAGC 356678
Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594
|||||| |||||| |||| ||| || | |||||| || || |||| || || ||||||
Sbjct 356677 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCTTCTTGCGCTCGGCCTTG 356618
Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626
||||| ||||| ||||||||||| || ||
Sbjct 356617 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGA 356586
>seq715
Length=197388
Score = 136 bits (150), Expect = 7e-27
Identities = 173/238 (73%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 241390 CTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCG 241449
||| ||||| | | || ||| || ||| | ||||||||| || |||||||| |||||
Sbjct 178328 CTGGCAGCCGTTGGTCACGTGATTCATGACTTTCTGTTTGAGCTGCGCCACCTGCTCCCG 178269
Query 241450 CAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTC 241509
|| | | || || | ||| | | ||| | | ||| ||||||||||| |||||
Sbjct 178268 TAGGATGCTGGCCGTGGACGCCAGGTCCGAGTTCTGCGTCTTCAGCACCTTCACCTTCTC 178209
Query 241510 CTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTT 241569
|||||||| | |||||| ||||| || | | |||||| |||| ||| || | ||||||
Sbjct 178208 CTCCAGCCTGGAGATGCGCTCCAGCTTCCTCTTGCGGCACTTGGAGGCGGCGATGCGGTT 178149
Query 241570 CCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
|| || |||| | |||||||||||||| ||||| ||||| |||||| || |||
Sbjct 178148 CCTCAGCTTCTTCCTCTCCGCCTTGATGCGCTCCTGCGTCTCCAGGTCGATGGGTGAC 178091
>seq10696
Length=1481488
Score = 134 bits (148), Expect = 3e-26
Identities = 158/214 (74%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 241414 CAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAG 241473
|| ||| | ||| ||||| ||||||||||| || ||||| | | || ||| | ||
Sbjct 363651 CATGACTTTCTGCTTGAGCTGGGCCACCTGCTCGCGCAGCATGTTGGCCGTAGACGCGAG 363592
Query 241474 TCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAG 241533
| | ||| | |||||||||| |||||| || |||||||| || | |||||| |||||
Sbjct 363591 CTCGGAGTTCTGAGACTTGAGCGTCTTCACCTTGTCCTCCAGGCGTGAGATGCGCTCCAG 363532
Query 241534 TTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTT 241593
|| | | |||||| |||| || || | |||||| || | | ||| || || |||||
Sbjct 363531 CTTCCTCTTGCGGCACTTGGACGCGGCGATGCGGTTACGCATGCGCTTGCGCTCGGCCTT 363472
Query 241594 GATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
|||||| |||||| |||||||||||| || |||
Sbjct 363471 GATGCGCTCCTGGCTCTCCATGTCGATGGGCGAC 363438
>seq4474
Length=14602
Score = 102 bits (112), Expect = 2e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214
|| || | |||||||||| | ||||||||| || |||||||||| || |||| ||||
Sbjct 5244 TCATCTCTGCTGATGAGCTCATTGGAGAAGGTAAGGCCAGGCATGAGTCCTCTCTTTTTG 5185
Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273
|||||||| || || || ||||| || ||||||||||| || ||||| || || || ||
Sbjct 5184 AGCCAGAAGATGGCAGCAAAAGAACCTGAGAAGAAGATTCCTTCCACAGCAGCAAAGGC 5126
>seq10607
Length=2140885
Score = 96.9 bits (106), Expect = 6e-15
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872
||||||| |||||| || || || | |||||| || |||||||| |||| |||| |
Sbjct 831356 ACTCTCTTCATGAAGAGATCAGGAATCCACAGAGCATAAAACAGGTCTCTGGCCCTCTGC 831415
Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932
|| || || | ||| || ||| || || |||||||||||||| |||||| |||
Sbjct 831416 TCTTCTTTACCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAAGATGTCAAAGTGCCATGGC 831475
Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963
|| | ||| |||||||| || || |||||||
Sbjct 831476 TCAAGGTACATGGCAAATGCTCCAGGCCTCT 831506
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931407799942400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |