Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq42 210 4e-49 seq10524 176 8e-39 seq306 140 6e-28 seq715 136 7e-27 seq10696 134 3e-26 seq4474 102 2e-16 seq10607 96.9 6e-15 >seq42 Length=1087958 Score = 210 bits (232), Expect = 4e-49 Identities = 193/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||| ||||| || | ||| | || |||| ||| ||||| ||||||||||| || | Sbjct 16269 GCTGGCAGCCGCTGCTGACGTGTCTGAGCACCTTCTGCTTGAGCTGGGCCACCTGCTCGC 16328 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 | || |||||||| || | ||||| || |||||||| |||||||| ||||| ||| | Sbjct 16329 GGAGCACGGACGCCGTGCTCGACAGCCCCGCGTTGTCCGACTTGAGAACCTTGACTCGGT 16388 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 ||||||| ||||||||||| ||||| || ||||| ||||| ||||||||||||| ||||| Sbjct 16389 CCTCCAGGCGCGCGATGCGCTCCAGCTTTCGCCGCCGGCACTTGGTGGCTGCCAGGCGGT 16448 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGACT 241628 ||| ||| | ||| || ||||||||||| || |||||| ||||| ||| || || ||| Sbjct 16449 TCCTGAGACGCTTCCGCTCCGCCTTGATCCGCTCCTGGCTCTCCAGGTCAATGGGCGACA 16508 Query 241629 TGGG 241632 |||| Sbjct 16509 TGGG 16512 Score = 89.7 bits (98), Expect = 1e-12 Identities = 89/115 (77%), Gaps = 8/115 (7%) Strand=Plus/Plus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||| ||||| ||||||||| | || || || |||||||| || | ||||| ||||||| Sbjct 16302 TCTGCTTGAGCTGGGCCACCTGCTCGCGGAGCACGGACGCCGTGCTCGACAGCCCCGCGT 16361 Query 238986 TATCAGACTTGAGCAT------TC--TCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || |||||||| | || |||||||| ||||||||||| |||||||| Sbjct 16362 TGTCCGACTTGAGAACCTTGACTCGGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 16416 >seq10524 Length=4055774 Score = 176 bits (194), Expect = 8e-39 Identities = 165/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 241408 GTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATT 241467 |||| || ||||| ||| ||||| || ||||| || || ||||| | || |||| | | Sbjct 139159 GTGCGTCATGACCTTCTGCTTGAGCTGCGCCACTTGCTCGCGCAGCAGCGAGGCGGCACT 139100 Query 241468 GGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCG 241527 || || || |||||||| | ||| ||||||||||| || |||||||| |||| |||||| Sbjct 139099 CGAGAGCCCGGCGTTGTCCGTCTTCAGCACCTTCACCTTGTCCTCCAGGCGCGAGATGCG 139040 Query 241528 TTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTC 241587 |||||| ||||||| | ||| |||||||| |||| ||||| || || | ||| || || Sbjct 139039 TTCCAGCTTGCGCCTCCTGCACTTGGTGGCCGCCAGACGGTTGCGTAGCCGCTTGCGCTC 138980 Query 241588 CGCCTTGATGCGTTCCTGGTCCTCCATGTC 241617 ||||| ||||| ||||||||||||| ||| Sbjct 138979 AGCCTTCATGCGCTCCTGGTCCTCCAGGTC 138950 >seq306 Length=458256 Score = 140 bits (154), Expect = 6e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 |||||| ||| ||||| || |||||||| |||| ||| ||| ||||| || || Sbjct 356797 AGGACCCTCTGCTTGAGCTGCGCCACCTGCTCCCTCAGCACGCTGGCGGTGGAGGCGAGC 356738 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| |||||| || ||||||||||||| |||||| ||||| Sbjct 356737 TCCGTGTTCTGGCTCTTGAGGGACTTCACCTTGTCCTCCAGCCGCGAGATGCGCTCCAGC 356678 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || |||| || || |||||| Sbjct 356677 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCTTCTTGCGCTCGGCCTTG 356618 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 ||||| ||||| ||||||||||| || || Sbjct 356617 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGA 356586 >seq715 Length=197388 Score = 136 bits (150), Expect = 7e-27 Identities = 173/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 241390 CTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCG 241449 ||| ||||| | | || ||| || ||| | ||||||||| || |||||||| ||||| Sbjct 178328 CTGGCAGCCGTTGGTCACGTGATTCATGACTTTCTGTTTGAGCTGCGCCACCTGCTCCCG 178269 Query 241450 CAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTC 241509 || | | || || | ||| | | ||| | | ||| ||||||||||| ||||| Sbjct 178268 TAGGATGCTGGCCGTGGACGCCAGGTCCGAGTTCTGCGTCTTCAGCACCTTCACCTTCTC 178209 Query 241510 CTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTT 241569 |||||||| | |||||| ||||| || | | |||||| |||| ||| || | |||||| Sbjct 178208 CTCCAGCCTGGAGATGCGCTCCAGCTTCCTCTTGCGGCACTTGGAGGCGGCGATGCGGTT 178149 Query 241570 CCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 || || |||| | |||||||||||||| ||||| ||||| |||||| || ||| Sbjct 178148 CCTCAGCTTCTTCCTCTCCGCCTTGATGCGCTCCTGCGTCTCCAGGTCGATGGGTGAC 178091 >seq10696 Length=1481488 Score = 134 bits (148), Expect = 3e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 241414 CAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAG 241473 || ||| | ||| ||||| ||||||||||| || ||||| | | || ||| | || Sbjct 363651 CATGACTTTCTGCTTGAGCTGGGCCACCTGCTCGCGCAGCATGTTGGCCGTAGACGCGAG 363592 Query 241474 TCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAG 241533 | | ||| | |||||||||| |||||| || |||||||| || | |||||| ||||| Sbjct 363591 CTCGGAGTTCTGAGACTTGAGCGTCTTCACCTTGTCCTCCAGGCGTGAGATGCGCTCCAG 363532 Query 241534 TTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTT 241593 || | | |||||| |||| || || | |||||| || | | ||| || || ||||| Sbjct 363531 CTTCCTCTTGCGGCACTTGGACGCGGCGATGCGGTTACGCATGCGCTTGCGCTCGGCCTT 363472 Query 241594 GATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||||| |||||| |||||||||||| || ||| Sbjct 363471 GATGCGCTCCTGGCTCTCCATGTCGATGGGCGAC 363438 >seq4474 Length=14602 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || || | |||||||||| | ||||||||| || |||||||||| || |||| |||| Sbjct 5244 TCATCTCTGCTGATGAGCTCATTGGAGAAGGTAAGGCCAGGCATGAGTCCTCTCTTTTTG 5185 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||| || || || ||||| || ||||||||||| || ||||| || || || || Sbjct 5184 AGCCAGAAGATGGCAGCAAAAGAACCTGAGAAGAAGATTCCTTCCACAGCAGCAAAGGC 5126 >seq10607 Length=2140885 Score = 96.9 bits (106), Expect = 6e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 ||||||| |||||| || || || | |||||| || |||||||| |||| |||| | Sbjct 831356 ACTCTCTTCATGAAGAGATCAGGAATCCACAGAGCATAAAACAGGTCTCTGGCCCTCTGC 831415 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || || || | ||| || ||| || || |||||||||||||| |||||| ||| Sbjct 831416 TCTTCTTTACCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAAGATGTCAAAGTGCCATGGC 831475 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 || | ||| |||||||| || || ||||||| Sbjct 831476 TCAAGGTACATGGCAAATGCTCCAGGCCTCT 831506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931407799942400