Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4474 118 2e-21 >seq4474 Length=14602 Score = 118 bits (130), Expect = 2e-21 Identities = 104/127 (82%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||||||||||||||| || ||||| ||| ||||| ||||| |||||||||| Sbjct 5121 TGGTGGCCTTTGCTGCTGTGGAAGGAATCTTCTTCTCAGGTTCTTTTGCTGCCATCTTCT 5180 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 ||||||| || || |||| |||||| || || ||| ||||| |||||||||||||| Sbjct 5181 GGCTCAAAAAG-AGAGGACTCATGCCTGGCCTTACCTTCTCCAATGAGCTCATCAGCAGA 5239 Query 26002 GACGAGG 26008 || |||| Sbjct 5240 GATGAGG 5246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928720160638400