Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq167 156 3e-32 seq228 129 4e-24 seq10722 95.1 8e-14 seq592 89.7 3e-12 >seq167 Length=797236 Score = 156 bits (172), Expect = 3e-32 Identities = 366/547 (67%), Gaps = 8/547 (1%) Strand=Plus/Minus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 ||||| ||||| | |||||||| ||| ||||| | ||||| || |||| ||||| Sbjct 619294 ATTGGAATTGACCTTGGAACTACCTACTCCTGTGTGGGTGTTTTCCAGCATGGCAAAGTT 619235 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 ||||| |||||||| || ||||| || || ||||| || ||||| | ||||| || Sbjct 619234 GAAATCATTGCCAACGATCAAGGAAACAGGACAACTCCCAGCTATGTGGCGTTTACAGAC 619175 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 ||||| || || ||||||||||| ||| | || | || ||||| || || Sbjct 619174 ACTGAGAGGCTCATCGGAGATGCTGCCAAAAACCAGGTCGCCATGAATCCCAACAACACC 619115 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 ||||||||||| || | ||||||| | | |||||||| | || || || || Sbjct 619114 ATTTTTGATGCAAAGCGTCTGATTGGCAGAAGGTTTGATGACGCTGTGGTTCAGTCAGAC 619055 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATATAGAAGCAA 474629 ||| | ||||| ||||| ||||| | || ||| || || || | | || | | Sbjct 619054 ATGAAACTCTGGCCCTTTAAAGTGATCAGTGATGGAGGCAAGCCGAAAGTGGAGGTGGAG 618995 Query 474630 TACACGCAGGTGAAACTAAACA-ATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCC 474688 |||| ||| | | | || | |||| || || | || || || ||||| | | Sbjct 618994 TACA---AGGGGGAGGTGAAGACCTTTTACCCTGAGGAGATCTCGTCTATGGTCCTTGTG 618938 Query 474689 AAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTAC 474747 ||||||| | | | | ||| |||| | ||| ||| || |||| ||||| || Sbjct 618937 AAAATGAGGGAGATTTCTGAAGCCTAT-TTGGGCCAGAGAGTCACCAATGCCGTAATCAC 618879 Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807 || || || || || || || || || | || || || |||||||| ||| ||||| Sbjct 618878 AGTCCCGGCTTACTTCAACGACTCCCAGAGGCAGGCGACCAAAGATGCTGGAGTGATTGC 618819 Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCT 474867 || || ||||| | | || || ||||| || ||||||||||| |||| || ||||| Sbjct 618818 TGGACTGAATGTGCTGAGAATCATCAATGAGCCCACAGCAGCCGCCATTGCCTACGGTCT 618759 Query 474868 TGATAAG 474874 || ||| Sbjct 618758 GGACAAG 618752 >seq228 Length=588457 Score = 129 bits (142), Expect = 4e-24 Identities = 321/485 (66%), Gaps = 2/485 (0%) Strand=Plus/Minus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 || |||| ||||| ||||| | || || || ||| |||||||| || | || ||| Sbjct 47481 GAGTTGCTATTGGCATTGACCTGGGCACGACCTACTCTTGTGTAGGAGTGTTCCAGCATG 47422 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | ||||| || || ||||| || ||||| || || ||||| || || ||||| ||| Sbjct 47421 GAAAAGTGGAGATCATTGCTAACGACCAGGGAAACAGAACCACCCCCAGCTATGTGGCTT 47362 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 | || || || || || |||||||||||||| ||| | |||| || || || Sbjct 47361 TCACAGACACAGAGAGGCTGATTGGAGATGCTGCAAAAAACCAAGTGGCCATGAACCCCA 47302 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || ||| | ||||| || || || |||| || || || ||||| ||| | || | Sbjct 47301 ACAACACTGTGTTTGACGCCAAGAGGCTGATCGGCCGCAAGTTTGACGATCCTGTCGTTC 47242 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAG 474623 | || |||||| || ||||| | | ||| | | | ||| || || ||| | | Sbjct 47241 AGTCCGATATGAAGCACTGGCCCTCCCAAGTGGTCAGCGATGGAGGAAAGCCAAAGGTTC 47182 Query 474624 AAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683 ||| ||| || || || |||| || ||| | ||||| || |||||| Sbjct 47181 AAGTTGAGCACAAGGGAGAGCAGAAGACCTTTTACCCTGAAGATATTTCCTCCATGGTTC 47122 Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTA 474742 | | || ||| || ||| || ||| | ||||| ||||| | || || |||| || Sbjct 47121 TGGTGAAGATGTAAGAAATTGCAGAG-GCCTATCTGGGACAGAAGGTGACAAATGCCGTT 47063 Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 |||||||| || || || || || || ||||| | || || || |||||||| ||| Sbjct 47062 ATTACTGTACCTGCCTACTTCAACGACTCTCAGAGGCAGGCCACCAAAGATGCTGGAGTG 47003 Query 474803 ATTGC 474807 ||||| Sbjct 47002 ATTGC 46998 >seq10722 Length=1616126 Score = 95.1 bits (104), Expect = 8e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| ||||||| || || || |||||||| ||||| ||||| || || || |||| Sbjct 764317 ATGCAGTGGTTACTGTACCTGCGTACTTTAATGACTCTCAGCGTCAGGCTACAAAGGATG 764376 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | ||| | || || ||||| | || || || ||||| ||||||||||| || Sbjct 764377 CAGGGACCATTTCTGGACTAAATGTCCTTCGAATCATCAATGAGCCAACAGCAGCTGCCA 764436 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 | || || || || || ||||| Sbjct 764437 TAGCCTACGGCCTGGACAAGAA 764458 >seq592 Length=234143 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 ||||| ||||||| || || || || || || || || || ||||| | ||||| || Sbjct 14522 GTAACAAATGCAGTCATCACAGTACCTGCCTACTTCAACGACTCTCAGAGGCAAGCCACC 14581 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 ||||| || || | ||||| || || ||||| | || ||||||||||| ||||||||| Sbjct 14582 AAAGACGCTGGTACTATTGCTGGCCTGAATGTCCTCCGCATTATTAATGAGCCAACAGCA 14641 Query 474848 GCCGCACTTGCTTATGG 474864 || || | || ||||| Sbjct 14642 GCGGCCATCGCCTATGG 14658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267718723763780