Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq167 156 3e-32
seq228 129 4e-24
seq10722 95.1 8e-14
seq592 89.7 3e-12
>seq167
Length=797236
Score = 156 bits (172), Expect = 3e-32
Identities = 366/547 (67%), Gaps = 8/547 (1%)
Strand=Plus/Minus
Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391
||||| ||||| | |||||||| ||| ||||| | ||||| || |||| |||||
Sbjct 619294 ATTGGAATTGACCTTGGAACTACCTACTCCTGTGTGGGTGTTTTCCAGCATGGCAAAGTT 619235
Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451
||||| |||||||| || ||||| || || ||||| || ||||| | ||||| ||
Sbjct 619234 GAAATCATTGCCAACGATCAAGGAAACAGGACAACTCCCAGCTATGTGGCGTTTACAGAC 619175
Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511
||||| || || ||||||||||| ||| | || | || ||||| || ||
Sbjct 619174 ACTGAGAGGCTCATCGGAGATGCTGCCAAAAACCAGGTCGCCATGAATCCCAACAACACC 619115
Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571
||||||||||| || | ||||||| | | |||||||| | || || || ||
Sbjct 619114 ATTTTTGATGCAAAGCGTCTGATTGGCAGAAGGTTTGATGACGCTGTGGTTCAGTCAGAC 619055
Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATATAGAAGCAA 474629
||| | ||||| ||||| ||||| | || ||| || || || | | || | |
Sbjct 619054 ATGAAACTCTGGCCCTTTAAAGTGATCAGTGATGGAGGCAAGCCGAAAGTGGAGGTGGAG 618995
Query 474630 TACACGCAGGTGAAACTAAACA-ATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCC 474688
|||| ||| | | | || | |||| || || | || || || ||||| | |
Sbjct 618994 TACA---AGGGGGAGGTGAAGACCTTTTACCCTGAGGAGATCTCGTCTATGGTCCTTGTG 618938
Query 474689 AAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTAC 474747
||||||| | | | | ||| |||| | ||| ||| || |||| ||||| ||
Sbjct 618937 AAAATGAGGGAGATTTCTGAAGCCTAT-TTGGGCCAGAGAGTCACCAATGCCGTAATCAC 618879
Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807
|| || || || || || || || || | || || || |||||||| ||| |||||
Sbjct 618878 AGTCCCGGCTTACTTCAACGACTCCCAGAGGCAGGCGACCAAAGATGCTGGAGTGATTGC 618819
Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCT 474867
|| || ||||| | | || || ||||| || ||||||||||| |||| || |||||
Sbjct 618818 TGGACTGAATGTGCTGAGAATCATCAATGAGCCCACAGCAGCCGCCATTGCCTACGGTCT 618759
Query 474868 TGATAAG 474874
|| |||
Sbjct 618758 GGACAAG 618752
>seq228
Length=588457
Score = 129 bits (142), Expect = 4e-24
Identities = 321/485 (66%), Gaps = 2/485 (0%)
Strand=Plus/Minus
Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383
|| |||| ||||| ||||| | || || || ||| |||||||| || | || |||
Sbjct 47481 GAGTTGCTATTGGCATTGACCTGGGCACGACCTACTCTTGTGTAGGAGTGTTCCAGCATG 47422
Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443
| ||||| || || ||||| || ||||| || || ||||| || || ||||| |||
Sbjct 47421 GAAAAGTGGAGATCATTGCTAACGACCAGGGAAACAGAACCACCCCCAGCTATGTGGCTT 47362
Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503
| || || || || || |||||||||||||| ||| | |||| || || ||
Sbjct 47361 TCACAGACACAGAGAGGCTGATTGGAGATGCTGCAAAAAACCAAGTGGCCATGAACCCCA 47302
Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563
|| ||| | ||||| || || || |||| || || || ||||| ||| | || |
Sbjct 47301 ACAACACTGTGTTTGACGCCAAGAGGCTGATCGGCCGCAAGTTTGACGATCCTGTCGTTC 47242
Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAG 474623
| || |||||| || ||||| | | ||| | | | ||| || || ||| | |
Sbjct 47241 AGTCCGATATGAAGCACTGGCCCTCCCAAGTGGTCAGCGATGGAGGAAAGCCAAAGGTTC 47182
Query 474624 AAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683
||| ||| || || || |||| || ||| | ||||| || ||||||
Sbjct 47181 AAGTTGAGCACAAGGGAGAGCAGAAGACCTTTTACCCTGAAGATATTTCCTCCATGGTTC 47122
Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTA 474742
| | || ||| || ||| || ||| | ||||| ||||| | || || |||| ||
Sbjct 47121 TGGTGAAGATGTAAGAAATTGCAGAG-GCCTATCTGGGACAGAAGGTGACAAATGCCGTT 47063
Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802
|||||||| || || || || || || ||||| | || || || |||||||| |||
Sbjct 47062 ATTACTGTACCTGCCTACTTCAACGACTCTCAGAGGCAGGCCACCAAAGATGCTGGAGTG 47003
Query 474803 ATTGC 474807
|||||
Sbjct 47002 ATTGC 46998
>seq10722
Length=1616126
Score = 95.1 bits (104), Expect = 8e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
||||||| ||||||| || || || |||||||| ||||| ||||| || || || ||||
Sbjct 764317 ATGCAGTGGTTACTGTACCTGCGTACTTTAATGACTCTCAGCGTCAGGCTACAAAGGATG 764376
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854
| || | ||| | || || ||||| | || || || ||||| ||||||||||| ||
Sbjct 764377 CAGGGACCATTTCTGGACTAAATGTCCTTCGAATCATCAATGAGCCAACAGCAGCTGCCA 764436
Query 474855 TTGCTTATGGTCTTGATAAGAA 474876
| || || || || || |||||
Sbjct 764437 TAGCCTACGGCCTGGACAAGAA 764458
>seq592
Length=234143
Score = 89.7 bits (98), Expect = 3e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787
||||| ||||||| || || || || || || || || || ||||| | ||||| ||
Sbjct 14522 GTAACAAATGCAGTCATCACAGTACCTGCCTACTTCAACGACTCTCAGAGGCAAGCCACC 14581
Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847
||||| || || | ||||| || || ||||| | || ||||||||||| |||||||||
Sbjct 14582 AAAGACGCTGGTACTATTGCTGGCCTGAATGTCCTCCGCATTATTAATGAGCCAACAGCA 14641
Query 474848 GCCGCACTTGCTTATGG 474864
|| || | || |||||
Sbjct 14642 GCGGCCATCGCCTATGG 14658
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267718723763780
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |