Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq10712 120 4e-22 seq10523 113 5e-20 seq24 86.0 7e-12 >seq10712 Length=1479189 Score = 120 bits (132), Expect = 4e-22 Identities = 580/908 (64%), Gaps = 51/908 (6%) Strand=Plus/Plus Query 160053 AGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGCG 160112 ||||| | ||||| ||| | | ||||| ||| | |||| || || |||||||| Sbjct 1208598 AGATGCTTCTCCAGGCATCGTATGGCGATGGGGTCGAAGTCTGTATCAAACTTATTTGCA 1208657 Query 160113 AACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACG 160172 || | ||||| | | |||||| ||||| || | |||||| | ||| | || || | | Sbjct 1208658 AATAAATGGT---CCTGCTGTAGCATCCACTGGAGGTCTCCTGCCCCATATACACAAATG 1208714 Query 160173 GAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCG 160232 ||||| | || ||| | || || || |||| ||| | | |||||||| Sbjct 1208715 GAACGGACATGAGTGCCCTGACAGGGTGGATACACAGCATCA------AAATCACCTTCA 1208768 Query 160233 TAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTAC 160292 | |||| ||| || | | | || || | | |||||||| | ||| |||||| Sbjct 1208769 TGGTACACCCATTTAATTAGGCGGGAGATGGTGTTCATGTCGGTTCTATCGAATTTGTGG 1208828 Query 160293 ATCAGGG---GAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGT 160349 ||| ||| | || ||||||||||| || ||||| | |||||||| ||| Sbjct 1208829 T---GGGCACGAATGTACCCAGGAACGCCGGGGATGCGCTGCATTGTGGCCCAAAGGAAC 1208885 Query 160350 TCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCT----GTC 160405 || || |||||||| || || |||||||| || | ||| | | | | ||| Sbjct 1208886 TCATCAGGGCTGTAGGTATCTTTAGACCACGAAATAAGTTCT----TGAGCTTTGGGGTC 1208941 Query 160406 CCGCAGAACGT-GAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATA 160464 || || | ||| | ||| | | |||| |||| |||||| | || || || | Sbjct 1208942 TTCAAGGACAAAGCGTAT-GAAGGCACGGCTCACCACAATGTACGCACCACCTGAAAACA 1209000 Query 160465 TCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTA-----GACACCACTCC 160519 || ||| || || | | |||| | | ||||| | ||||| | Sbjct 1209001 TCTTTATACCAGAGGGAGGAGGCTTTTTGGCTTCGTTAGTGTTGTGGATGTCACCATT-- 1209058 Query 160520 TTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGT 160579 |||||| | ||||||||||||||||||| | ||| | | |||||| || || Sbjct 1209059 TTTCACAAT---GTGTCGCTTCTTCCACCTGTACTCCTTATTAGAGGGCATGGTCTCAGT 1209115 Query 160580 CTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTG-ACGATCTCTAGGTTCGTCT 160638 ||| | |||||| |||| | | | ||||| || | || ||||| ||||| || | Sbjct 1209116 CTCCAAGCTGTTGCCACCATGCAACCCCTTCAG-GGCACGCACCATCTCCAGGTTGGTTT 1209174 Query 160639 TGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCA--GGTC 160696 | | |||||||| ||| || | ||| || | ||||||||| ||| ||| | || Sbjct 1209175 TCATGGGAAAGTCCTGACCACAAAGGTTAATGAAGTACTTCCA----GCGGTCACTGATC 1209230 Query 160697 --GTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACT 160754 || |||||| ||||||| || || || ||||| || || |||||| ||||| || Sbjct 1209231 TGGTAAAGGTCCTTCATGCAGTTGATGTCAGCCTGGACACGACTCCAGCTGGCGTAGACC 1209290 Query 160755 ACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACC 160811 || | || || | |||||| | || || || || || || || ||| | | | Sbjct 1209291 ACCTCTTCCAGCTGACTGGCAATGAAAACATTGTCAAAGCAGGAGACGGTGGCATTGATT 1209350 Query 160812 ACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGA 160871 | || || || || | |||||| ||||| || | || || | ||||||| Sbjct 1209351 GCTGCTCGAGTTGAC-TCGGA--GGCCTTTTTATCCACATGGATACAGTAAAAGTTCTGA 1209407 Query 160872 GGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATA 160931 || |||||||||| || || | || |||||| ||| | ||| ||||| | ||||| Sbjct 1209408 GGAGCGTAGATGGATCTCAGAAGCCGCTCGAAGTTCTGCACCTTGTGATGAACTACGATG 1209467 Query 160932 GAGTAGGC 160939 || || || Sbjct 1209468 GAATACGC 1209475 >seq10523 Length=3625887 Score = 113 bits (124), Expect = 5e-20 Identities = 232/343 (68%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 160620 ACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTC 160679 || |||||| || || |||| || || || | ||| || ||| | || |||| || Sbjct 395816 ACCATCTCTGCATTGGTTTTGATGGGGAAATCTGCACCACAAGTGTTGAGCAGGTACCTC 395757 Query 160680 CATTTCGCGCTCAGGTCGTGC--AGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGC 160737 || | || || | | | || ||||| |||||| || || || || || || || Sbjct 395756 CACT--GCACTGACGACTTGAGGAGGTCTTGCATGCAGTTGATGTCGGCTTGAACTCGAG 395699 Query 160738 TCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACG 160797 |||||| ||||| || || |||| | ||| ||||||||||| || || | ||| | Sbjct 395698 ACCAGGAGGCGTAGACCACACTCTCCAATTTGCTGGCCACAAACACATTGGGCAGACAAG 395639 Query 160798 ACACGATTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGC 160857 | ||| || ||| ||| | || ||| || ||| ||||||||| || | Sbjct 395638 ATGTGATAGCCTTCACAGCCTCCATAAATTCCTTGGACGACTTCGTGTCCACGTGGACAC 395579 Query 160858 AATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTAT 160917 | || | ||||||||| | ||| ||||| | || | |||||| |||||||| ||||| | Sbjct 395578 AGTAGATGTTCTGAGGAGAGTAAATGGCACGCAGGAGCCTCTCAAACATCTCAATCTTCT 395519 Query 160918 GATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTC 160960 ||| ||||| || ||| |||| || || || || | ||||| Sbjct 395518 CATGAATCACCATGGAGAAGGCGATGGGGAAGTCTCTTTCCTC 395476 Score = 107 bits (118), Expect = 2e-18 Identities = 208/307 (68%), Gaps = 9/307 (3%) Strand=Plus/Minus Query 160084 CGTCAACGTCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGT---AGGATCC 160140 |||| || ||| ||| || ||||| ||||| || || | ||||| | |||| Sbjct 396346 CGTCCACTTCTGGGTCAAACTTATTGGCGAAGAGGTGTT------TCTGTCTCACAATCC 396293 Query 160141 AGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCG 160200 | | | ||| || | || | ||||| || | | || |||| | || |||| || | Sbjct 396292 ATTTGATGTCCCCTGCACCATAAACGCACACTGCATGTCTGTGAGCCCCAGTGCACGGTG 396233 Query 160201 GGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTA 160260 ||||| | ||||||||| || ||| ||||| || ||||||||| | || || | Sbjct 396232 GGTACGGTGCTCCTTTCCTCAAGTCCCCTTCAAGATAACTCCACTTCACCAGTCTTGCAA 396173 Query 160261 TCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGG 160320 | ||| ||||||| || ||| || ||| | | ||| || || || | | || Sbjct 396172 TGGCCAGCATGTCTGACTCGTCATACTTGCCGTTGGGTGGATTGGATCCAGGCATGTTGG 396113 Query 160321 GCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATT 160380 |||| | |||||| || ||||||| ||| || || || ||||||||||| || ||||| Sbjct 396112 GCATTCTCTGTAGTGTAGCCCACATGTGCTCATCTGGACTGTACGTGTCTTTCTCCCATT 396053 Query 160381 CCATGAA 160387 ||||||| Sbjct 396052 CCATGAA 396046 >seq24 Length=1229127 Score = 86.0 bits (94), Expect = 7e-12 Identities = 119/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 176263 AATCATTAACATGTATAAATGCGTGTGGT-GGAATGTAGTTTTCATAATTTTGTCTGGAG 176321 |||||| ||||| || || |||| || | ||| ||||||| || |||||||||| Sbjct 657598 AATCATCCACATGAATGAAAGCGT-TGCTCGGAGCAAAGTTTTCGTAGTTTTGTCTGGGA 657656 Query 176322 GGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGCGGTAGATCTTTTCTGAGATG 176381 ||||||||||||| ||| || || | || | | | || || |||||| | |||| Sbjct 657657 GGTCCTAAAACTACTGGAACAGTTCCGGCGGCGAGCGGGGCGTTGAACTTTTCGGTGATG 657716 Query 176382 TAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACTTACA 176425 ||||| ||||||| ||||| || || |||| ||||| || || Sbjct 657717 TAGTCTCTGTGAATGGAGTTCTCGAAGGCTAGGTAGAATTTGCA 657760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577141744398600